Rroxscaffold_1G00066410

Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
87932490 .. 87933880
1391 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00066410.1

Sequence Viewer

Length: 210 bp
ATGAAACAAATAATAATAAGCCCAGAAACCTCTAAAGCTAAAGCATTAGAGAAGGTGGAGGATAAGTCCAAAGTTGCTAGGGCATTGAAGGAAAGTATTCTCCATCAAACATGTGAGGCAAAGCCATTGGCTCTGATCATTGATTGGAATTCACTCCTGTCTAACAAAAAGAAGAGAACTGTGATGTATTTCTTTGTATTTTGCTGCTGA

Protein Analysis

69

Amino Acids

7.91

Weight (kDa)

9.47

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 148
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 148
Asp700I GAANNNNTTC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 191
BccI CCATC 1 cut(s) 111
BclI TGATCA 1 cut(s) 135
BfaI CTAG 1 cut(s) 78
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
BseXI GCAGC 1 cut(s) 191
Bsp143I GATC 1 cut(s) 135
BssMI GATC 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 167
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 191
CviAII CATG 1 cut(s) 111
CviJI RGCY 4 cut(s) 21, 38, 124, 131
CviKI_1 RGCY 4 cut(s) 21, 38, 124, 131
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 148
FaeI CATG 1 cut(s) 114
FaiI YATR 1 cut(s) 112
FatI CATG 1 cut(s) 110
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 1 cut(s) 78
GluI GCNGC 1 cut(s) 205
Hin1II CATG 1 cut(s) 114
Hpy188I TCNGA 1 cut(s) 135
HpyAV CCTTC 2 cut(s) 46, 82
HpyCH4III ACNGT 1 cut(s) 181
Hsp92II CATG 1 cut(s) 114
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 1 cut(s) 135
LpnPI CCDG 2 cut(s) 36, 170
Lsp1109I GCAGC 1 cut(s) 191
MaeI CTAG 1 cut(s) 78
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 1 cut(s) 184
MluCI AATT 1 cut(s) 148
MnlI CCTC 3 cut(s) 40, 52, 109
MroXI GAANNNNTTC 1 cut(s) 96
NdeII GATC 1 cut(s) 135
NlaIII CATG 1 cut(s) 114
NspI RCATGY 1 cut(s) 114
PciI ACATGT 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 96
PkrI GCNGC 1 cut(s) 206
PscI ACATGT 1 cut(s) 110
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 1 cut(s) 135
SetI ASST 3 cut(s) 32, 40, 57
SgeI CNNG 4 cut(s) 35, 90, 123, 169
Sse9I AATT 1 cut(s) 148
SspMI CTAG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 181
TasI AATT 1 cut(s) 148
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 148
XceI RCATGY 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.