Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008201

Physical Location & Seq

Genomic Coordinates Forward (+)

53304233 .. 53305642

Gene Structure 1410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0360400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGCGAGGTAGTAGAAAACGGAGAAGCTGAGATTGCTGAGAAGCCGGTTATGGTGGCAATTGATGAAAGTGAGTGCAGTCACTATGCCCTTATGTGGGTTATTGACAACCTCAAAGAGTCCATAACTACCAAGTCACCGCTGCTCATCTTCATGGCGCAGCCTCCTCCGGCCACCAGCATCACATTCGCGGCGCCTCTCGGGGCTGCTCGCATGTATTGCCCTCCCACTCCAGAGTTTGCCAACAATATGCAGGAAAATCATAGGAAGCTTACAGTGGCTCTGTTGGAGAGAGCTAAAGACATATGTGCTAGTCATGGGGTGACTGCGAAGACAGTTACAGAGATTGGGGATGCTAAAACAGCCATATGTGCCGCAGTTCTAAAATACAATGTCAATTTGCTTGTTCTAGGTGAGCGTGGACTCGGAAAAATCAAAAGGGCTATCCTTGGGAGTGTTAGCAACTACTGTGTTCAGAATGCCAAGTGCCCTGTTCTTGTTGTGAAGAAACCACAGAGTAGTACTGGTGAAATCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase Hydrolase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

179

Amino Acids

19.24

Weight (kDa)

6.82

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	15 - 169	4.1e-25	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008201)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21040 FvH4_5g21040 FvH4_5g21040 FvH4_5g21040
malus_domestica	MD00G1084600.v1.1 MD00G1148500.v1.1
prunus_persica	Prupe.5G047800_v2.0.a1
pyrus_communis	pycom06g03450
rosa_chinensis	RchiOBHm_Chr5g0002991 RchiOBHm_Chr7g0208101
rosa_laevigata	RLG00000003255
rosa_multiflora	Rmu_sc0000706.1_g000043
rosa_roxburghii	Rroxscaffold_1G00005290 Rroxscaffold_1G00023360 Rroxscaffold_3G00250820
rosa_rugosa	Rorug04G0360400 Rorug07G0101300
rosa_samantha	Rh7AG234600 Rh7BG231000 Rh7CG250600 Rh7DG241400
rosa_wichuraiana	Rw5G034820 Rw7G020070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	193
AccII	CGCG	1 cut(s)	191
AciI	CCGC	3 cut(s)	140, 191, 375
AcoI	YGGCCR	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	1 cut(s)	523
AfiI	CCNNNNNNNGG	2 cut(s)	96, 97
AluBI	AGCT	3 cut(s)	29, 271, 296
AluI	AGCT	3 cut(s)	29, 271, 296
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	3 cut(s)	142, 160, 206
AspLEI	GCGC	2 cut(s)	160, 196
AsuHPI	GGTGA	4 cut(s)	129, 334, 425, 539
AvaI	CYCGRG	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	129, 172, 193
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BfaI	CTAG	2 cut(s)	312, 410
BfoI	RGCGCY	1 cut(s)	197
BisI	GCNGC	5 cut(s)	143, 161, 192, 207, 375
BlsI	GCNGC	5 cut(s)	144, 162, 193, 208, 376
BmcAI	AGTACT	1 cut(s)	523
BmeT110I	CYCGRG	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	195
BmsI	GCATC	2 cut(s)	189, 343
BpiI	GAAGAC	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 97
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	529
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	96, 97
BseMII	CTCAG	2 cut(s)	21, 30
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	1 cut(s)	156
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	3 cut(s)	129, 172, 193
BsgI	GTGCAG	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	173
BshNI	GGYRCC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	2 cut(s)	47, 170
BslI	CCNNNNNNNGG	2 cut(s)	96, 97
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	173
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	491
BspACI	CCGC	3 cut(s)	140, 191, 375
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	2 cut(s)	22, 31
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	195
BspT107I	GGYRCC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	448
BssNI	GRCGYC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	448
Bst4CI	ACNGT	3 cut(s)	277, 337, 470
BstACI	GRCGYC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	30, 39
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	2 cut(s)	160, 196
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 219, 362, 371
BstNSI	RCATGY	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	491
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	3 cut(s)	129, 172, 193
BstV2I	GAAGAC	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	2 cut(s)	160, 196
Cfr10I	RCCGGY	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	3 cut(s)	154, 214, 317
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	2 cut(s)	30, 39
DinI	GGCGCC	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	448
EgeI	GGCGCC	1 cut(s)	195
EheI	GGCGCC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	3 cut(s)	157, 217, 320
FatI	CATG	3 cut(s)	153, 213, 316
FauNDI	CATATG	2 cut(s)	305, 368
Fnu4HI	GCNGC	5 cut(s)	143, 161, 192, 207, 375
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	5 cut(s)	143, 161, 192, 207, 375
FspBI	CTAG	2 cut(s)	312, 410
GlaI	GCGC	2 cut(s)	159, 195
GluI	GCNGC	5 cut(s)	143, 161, 192, 207, 375
GsuI	CTGGAG	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	2 cut(s)	47, 170
HhaI	GCGC	2 cut(s)	160, 196
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	157, 217, 320
Hin6I	GCGC	2 cut(s)	158, 194
HinP1I	GCGC	2 cut(s)	158, 194
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	119, 423
HpaII	CCGG	2 cut(s)	47, 170
HphI	GGTGA	4 cut(s)	129, 334, 425, 539
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	2 cut(s)	428, 477
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	422
HpyCH4III	ACNGT	3 cut(s)	277, 337, 470
HpyCH4V	TGCA	2 cut(s)	78, 253
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 219, 362, 371
HpyF3I	CTNAG	2 cut(s)	30, 39
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	3 cut(s)	157, 217, 320
HspAI	GCGC	2 cut(s)	158, 194
KasI	GGCGCC	1 cut(s)	193
LpnPI	CCDG	7 cut(s)	60, 183, 190, 239, 246, 504, 510
Lsp1109I	GCAGC	3 cut(s)	129, 172, 193
LweI	GCATC	2 cut(s)	189, 343
MaeI	CTAG	2 cut(s)	312, 410
MaeIII	GTNAC	4 cut(s)	80, 135, 322, 337
MboII	GAAGA	3 cut(s)	142, 343, 517
MfeI	CAATTG	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	2 cut(s)	60, 397
Mly113I	GGCGCC	1 cut(s)	194
MlyI	GAGTC	2 cut(s)	128, 417
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	122, 174, 177, 207, 234
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	2 cut(s)	47, 170
MunI	CAATTG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	484
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	4 cut(s)	35, 219, 362, 371
NarI	GGCGCC	1 cut(s)	194
NdeI	CATATG	2 cut(s)	305, 368
NlaIII	CATG	3 cut(s)	157, 217, 320
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	3 cut(s)	80, 135, 322
NspI	RCATGY	1 cut(s)	217
PctI	GAATGC	1 cut(s)	484
PkrI	GCNGC	5 cut(s)	144, 162, 193, 208, 376
PleI	GAGTC	2 cut(s)	127, 417
PluTI	GGCGCC	1 cut(s)	197
PpsI	GAGTC	2 cut(s)	127, 417
PspN4I	GGNNCC	1 cut(s)	195
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
RseI	CAYNNNNRTG	1 cut(s)	152
SatI	GCNGC	5 cut(s)	143, 161, 192, 207, 375
ScaI	AGTACT	1 cut(s)	523
SchI	GAGTC	2 cut(s)	128, 417
SduI	GDGCHC	1 cut(s)	491
SetI	ASST	6 cut(s)	12, 31, 114, 273, 298, 415
SfaNI	GCATC	2 cut(s)	189, 343
SfoI	GGCGCC	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	60, 397
SsiI	CCGC	3 cut(s)	140, 191, 375
SspDI	GGCGCC	1 cut(s)	193
SspMI	CTAG	2 cut(s)	312, 410
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	3 cut(s)	277, 337, 470
TasI	AATT	2 cut(s)	60, 397
TatI	WGTACW	1 cut(s)	521
TauI	GCSGC	2 cut(s)	194, 377
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	3 cut(s)	80, 135, 322
TseI	GCWGC	3 cut(s)	142, 160, 206
Tsp45I	GTSAC	3 cut(s)	80, 135, 322
TspDTI	ATGAA	2 cut(s)	81, 142
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	282
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	2 cut(s)	312, 410
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.