Rw5G034820
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0008201
Physical Location & Seq
Forward (+)
60107580 .. 60111469
3890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G034820.1

Sequence Viewer

Length: 426 bp
ATGGATTTGGTCCATCCGATCGCCCACTTCCTATTCAAAACCCTCGCCGGCTTCGATGTCGACATCGCTGTCTTCGTCATGGCACTCGTCGTCTGTTTGTGTGTGTGTGTCATTGTGGCAGTATATATGTATGTGTGTGTCTTTTTACCCCGAGTTTATGCACCTCCCGAGGAAGAGGAGATATCTGATGAGACTAATAGAGAGACCGGCCGGACCAAGGCGATTTCGAGTGTGCCTATCCATCTTAGCATCTACTCCCCTAATGAGGGACAGGCAGAGAGCATAGTGCAGGACATTGAGAACATGGTTAGGGGCTTCATTGAGAAGCCCAACTGTATCATTCTGGCTATTTCCCCTGCCAACCAAGATCTTGCTACGTCTGATGCAATTAAGATCTCTCATGAAGTAGATCCCAAAGACTCGTAA

Protein Analysis

141

Amino Acids

15.55

Weight (kDa)

4.55

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 59 - 140 2.7e-10 Dynamin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
AccI GTMKAC 1 cut(s) 60
AclWI GGATC 1 cut(s) 404
AcoI YGGCCR 1 cut(s) 208
AfiI CCNNNNNNNGG 3 cut(s) 217, 265, 266
AgsI TTSAA 1 cut(s) 37
Alw26I GTCTC 2 cut(s) 185, 197
AlwI GGATC 1 cut(s) 404
Ama87I CYCGRG 2 cut(s) 150, 167
AoxI GGCC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 10, 213
AvaI CYCGRG 2 cut(s) 150, 167
AvaII GGWCC 2 cut(s) 10, 213
BbsI GAAGAC 1 cut(s) 64
BccI CCATC 2 cut(s) 21, 249
BcoDI GTCTC 2 cut(s) 185, 197
BglII AGATCT 2 cut(s) 367, 393
Bme18I GGWCC 2 cut(s) 10, 213
BmeT110I CYCGRG 2 cut(s) 150, 167
BmgT120I GGNCC 2 cut(s) 10, 213
BmsI GCATC 2 cut(s) 258, 373
BpiI GAAGAC 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 168, 216
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 265, 266
Bse118I RCCGGY 2 cut(s) 47, 206
BseDI CCNNGG 2 cut(s) 168, 216
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 3 cut(s) 217, 265, 266
BseRI GAGGAG 1 cut(s) 191
BseX3I CGGCCG 1 cut(s) 208
BsgI GTGCAG 1 cut(s) 308
Bsh1285I CGRYCG 2 cut(s) 21, 211
BshFI GGCC 1 cut(s) 210
BsiEI CGRYCG 2 cut(s) 21, 211
BsiHKCI CYCGRG 2 cut(s) 150, 167
BsiSI CCGG 3 cut(s) 48, 207, 211
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 3 cut(s) 217, 265, 266
BsmAI GTCTC 2 cut(s) 185, 197
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 1 cut(s) 210
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 2 cut(s) 150, 167
Bsp143I GATC 4 cut(s) 18, 367, 393, 409
BspANI GGCC 1 cut(s) 210
BspHI TCATGA 1 cut(s) 400
BspPI GGATC 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 197
BsrFI RCCGGY 2 cut(s) 47, 206
BssAI RCCGGY 2 cut(s) 47, 206
BssECI CCNNGG 2 cut(s) 168, 216
BssMI GATC 4 cut(s) 18, 367, 393, 409
BssT1I CCWWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 4 cut(s) 21, 370, 396, 412
BstMAI GTCTC 2 cut(s) 185, 197
BstMBI GATC 4 cut(s) 18, 367, 393, 409
BstMCI CGRYCG 2 cut(s) 21, 211
BstV2I GAAGAC 1 cut(s) 64
BstX2I RGATCY 3 cut(s) 367, 393, 409
BstYI RGATCY 3 cut(s) 367, 393, 409
BstZI CGGCCG 1 cut(s) 208
BsuRI GGCC 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 49
CciI TCATGA 1 cut(s) 400
Cfr10I RCCGGY 2 cut(s) 47, 206
Cfr13I GGNCC 2 cut(s) 10, 213
CviAII CATG 3 cut(s) 79, 304, 401
CviJI RGCY 5 cut(s) 51, 210, 315, 328, 347
CviKI_1 RGCY 5 cut(s) 51, 210, 315, 328, 347
DdeI CTNAG 1 cut(s) 245
DpnI GATC 4 cut(s) 20, 369, 395, 411
DpnII GATC 4 cut(s) 18, 367, 393, 409
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 208
EagI CGGCCG 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EclXI CGGCCG 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 197
Eco32I GATATC 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 10, 213
Eco52I CGGCCG 1 cut(s) 208
Eco88I CYCGRG 2 cut(s) 150, 167
EcoRV GATATC 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 3 cut(s) 82, 307, 404
FaiI YATR 9 cut(s) 80, 124, 126, 128, 132, 159, 284, 305, 402
FaqI GGGAC 1 cut(s) 282
FatI CATG 3 cut(s) 78, 303, 400
FblI GTMKAC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 210
HapII CCGG 3 cut(s) 48, 207, 211
Hin1II CATG 3 cut(s) 82, 307, 404
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 1 cut(s) 419
HpaII CCGG 3 cut(s) 48, 207, 211
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 3 cut(s) 18, 187, 382
Hpy188III TCNNGA 2 cut(s) 167, 401
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 377
HpyCH4V TGCA 3 cut(s) 161, 289, 386
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 377
Hsp92II CATG 3 cut(s) 82, 307, 404
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Kzo9I GATC 4 cut(s) 18, 367, 393, 409
LpnPI CCDG 7 cut(s) 61, 220, 224, 257, 275, 329, 369
LweI GCATC 2 cut(s) 258, 373
MaeII ACGT 1 cut(s) 377
MalI GATC 4 cut(s) 20, 369, 395, 411
MboI GATC 4 cut(s) 18, 367, 393, 409
MboII GAAGA 2 cut(s) 64, 185
MflI RGATCY 3 cut(s) 367, 393, 409
MluCI AATT 1 cut(s) 387
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 5 cut(s) 53, 163, 169, 174, 259
MroNI GCCGGC 1 cut(s) 47
MseI TTAA 1 cut(s) 390
MspI CCGG 3 cut(s) 48, 207, 211
NaeI GCCGGC 1 cut(s) 49
NdeII GATC 4 cut(s) 18, 367, 393, 409
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 3 cut(s) 82, 307, 404
PagI TCATGA 1 cut(s) 400
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 72
PdiI GCCGGC 1 cut(s) 49
Ple19I CGATCG 1 cut(s) 21
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
PspPI GGNCC 2 cut(s) 10, 213
PsuI RGATCY 3 cut(s) 367, 393, 409
PvuI CGATCG 1 cut(s) 21
SalI GTCGAC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 390
Sau3AI GATC 4 cut(s) 18, 367, 393, 409
Sau96I GGNCC 2 cut(s) 10, 213
SchI GAGTC 1 cut(s) 413
SetI ASST 2 cut(s) 166, 380
SfaNI GCATC 2 cut(s) 258, 373
SinI GGWCC 2 cut(s) 10, 213
Sse9I AATT 1 cut(s) 387
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 1 cut(s) 380
TaqI TCGA 3 cut(s) 54, 60, 227
TasI AATT 1 cut(s) 387
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TspDTI ATGAA 2 cut(s) 307, 417
VpaK11BI GGWCC 2 cut(s) 10, 213
XmiI GTMKAC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.