Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008201

Physical Location & Seq

Genomic Coordinates Forward (+)

7214269 .. 7215436

Gene Structure 1168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00005290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGACAGAGAAATCAAACCGTATTTCTAATGTTCCTATTCATCTCAGCATATACTCCCCAAATGTTGTCAATTTAACATTGATAGATTTGCCTGGCTTAACTAAGGTTGCTGTAGAGGGGCAGCCAGAGAGTATTGTTCAAGACATAGAAAATATGGTTCGTTCTTATATAGCAAAGCCTAACTGCATAATTCTAGCAATAACTCCTGCGAATCAAGACGTAGCAACATCAGATGCTATCAAGATCGCTAGAGAAGTTGATCCTACAGGCCCAATTATATACTATCTTAGAGCTGTGCCGGGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

102

Amino Acids

11.08

Weight (kDa)

5.18

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	3 - 92	2.6e-23	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Orthologous Genes (Group: OG0008201)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21040 FvH4_5g21040 FvH4_5g21040 FvH4_5g21040
malus_domestica	MD00G1084600.v1.1 MD00G1148500.v1.1
prunus_persica	Prupe.5G047800_v2.0.a1
pyrus_communis	pycom06g03450
rosa_chinensis	RchiOBHm_Chr5g0002991 RchiOBHm_Chr7g0208101
rosa_laevigata	RLG00000003255
rosa_multiflora	Rmu_sc0000706.1_g000043
rosa_roxburghii	Rroxscaffold_1G00005290 Rroxscaffold_1G00023360 Rroxscaffold_3G00250820
rosa_rugosa	Rorug04G0360400 Rorug07G0101300
rosa_samantha	Rh7AG234600 Rh7BG231000 Rh7CG250600 Rh7DG241400
rosa_wichuraiana	Rw5G034820 Rw7G020070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	300
BfaI	CTAG	2 cut(s)	194, 249
BfmI	CTRYAG	2 cut(s)	111, 264
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	93, 300
BmgT120I	GGNCC	1 cut(s)	269
BmrFI	CCNGG	2 cut(s)	93, 300
BmsI	GCATC	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	299
BsnI	GGCC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	243, 259
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	57
BspPI	GGATC	1 cut(s)	254
BssMI	GATC	2 cut(s)	243, 259
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	20
BstDEI	CTNAG	3 cut(s)	44, 102, 287
BstKTI	GATC	2 cut(s)	246, 262
BstMBI	GATC	2 cut(s)	243, 259
BstNI	CCWGG	1 cut(s)	93
BstSCI	CCNGG	2 cut(s)	91, 298
BstSFI	CTRYAG	2 cut(s)	111, 264
BstV1I	GCAGC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	269
CviJI	RGCY	5 cut(s)	96, 124, 178, 270, 293
CviKI_1	RGCY	5 cut(s)	96, 124, 178, 270, 293
DdeI	CTNAG	3 cut(s)	44, 102, 287
DpnI	GATC	2 cut(s)	245, 261
DpnII	GATC	2 cut(s)	243, 259
EcoRII	CCWGG	1 cut(s)	91
FaiI	YATR	9 cut(s)	50, 52, 146, 155, 168, 170, 188, 278, 280
Fnu4HI	GCNGC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	122
FspBI	CTAG	2 cut(s)	194, 249
GluI	GCNGC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	299
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	299
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	140, 215, 241
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	186
HpyF3I	CTNAG	3 cut(s)	44, 102, 287
HpySE526I	ACGT	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	243, 259
LpnPI	CCDG	5 cut(s)	78, 105, 138, 219, 252
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	2 cut(s)	194, 249
MaeII	ACGT	1 cut(s)	219
MalI	GATC	2 cut(s)	245, 261
MboI	GATC	2 cut(s)	243, 259
MluCI	AATT	3 cut(s)	70, 189, 273
MnlI	CCTC	1 cut(s)	109
MseI	TTAA	2 cut(s)	74, 98
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	2 cut(s)	93, 300
MvaI	CCWGG	1 cut(s)	93
NciI	CCSGG	1 cut(s)	300
NdeII	GATC	2 cut(s)	243, 259
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	269
SaqAI	TTAA	2 cut(s)	74, 98
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	2 cut(s)	243, 259
Sau96I	GGNCC	1 cut(s)	269
ScrFI	CCNGG	2 cut(s)	93, 300
SetI	ASST	3 cut(s)	108, 222, 295
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	2 cut(s)	111, 264
Sse9I	AATT	3 cut(s)	70, 189, 273
SspMI	CTAG	2 cut(s)	194, 249
StyD4I	CCNGG	2 cut(s)	91, 298
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	222
TasI	AATT	3 cut(s)	70, 189, 273
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	74, 98
Tru9I	TTAA	2 cut(s)	74, 98
TseI	GCWGC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	29
XspI	CTAG	2 cut(s)	194, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.