Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008201

Physical Location & Seq

Genomic Coordinates Reverse (-)

32633789 .. 32634670

Gene Structure 882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1148500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTGACCAGGAGGCCATTGGTCTTGCAGCTGCACAAGACAGAACAGGGAATGCAGGAATACGCCGAGTTCCTCCACTTGGAAAAGAAAAGATTCACTGATTTTTCTGCTGTTCGAAGAGAAATTCAGGATGAAACTGACAAAATTACTGGGAGATCAAAACAGATATCTAATGTTCCTATTCATCTCAGTATCTACTCCCCAAATGTTGTCAATCTAACTTTGATAGATTTGCCTGGTTTAACCAAGGTTGCTGTAGAGGGACAGCCAGAGAGTATCGTTCAAGACATTGAAAACATGGTTCATTCTTATGTTGAGAAGCCTAATTGCATCATTCTGGCAATAACTCCAGCCAATCAGGACATAGCAACATCTGATGCTATCAGGATTGCTAGACTAGTTGATCCTACAGGTGAAAGGACATTGGGTGTGTTGACAAAGCTTGATTTAGTGGACAAGGGAACAAATGCTTTGGATGTTCTTGAAGGAAGGTCTTATCGGCTGCAACACCCTTGGGTCGGAATTGTGAACCGTTCACAAGTTGATATTAACAAAAATGTGGATATGATTGCTGCCAGGCGGAGGGAGCGTGAATTTTTTAATTCCAGTCCAGATTACGCACATTTGGCAAGCAAAATGGGTTCAGAATATCTTGCAAATCTTCTCTCAAAACATTTGGAGTCTGTAATTAAAGCTCGCATTCCAGGAATAGCATCTTTGATCAATAAAAGCATCAGAGAACTTGAAGCGGAGTTGGATTATCTTGGTAGACCTGTTGCTATTGATGCAGGGGCACAGTTATATACTATCCTAGAGTTATGCCAGGCATTTGACCGGATATTCAAGGAGCATTTGGATGGAGGACGACCTGGTGGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

294

Amino Acids

32.86

Weight (kDa)

6.1

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	1 - 148	1.5e-38	Dynamin family
Dynamin_M	PF01031	156 - 287	1.8e-36	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008201)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21040 FvH4_5g21040 FvH4_5g21040 FvH4_5g21040
malus_domestica	MD00G1084600.v1.1 MD00G1148500.v1.1
prunus_persica	Prupe.5G047800_v2.0.a1
pyrus_communis	pycom06g03450
rosa_chinensis	RchiOBHm_Chr5g0002991 RchiOBHm_Chr7g0208101
rosa_laevigata	RLG00000003255
rosa_multiflora	Rmu_sc0000706.1_g000043
rosa_roxburghii	Rroxscaffold_1G00005290 Rroxscaffold_1G00023360 Rroxscaffold_3G00250820
rosa_rugosa	Rorug04G0360400 Rorug07G0101300
rosa_samantha	Rh7AG234600 Rh7BG231000 Rh7CG250600 Rh7DG241400
rosa_wichuraiana	Rw5G034820 Rw7G020070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	769
AciI	CCGC	2 cut(s)	580, 749
AclWI	GGATC	1 cut(s)	398
AcsI	RAATTY	2 cut(s)	123, 593
AfiI	CCNNNNNNNGG	3 cut(s)	79, 518, 582
AgsI	TTSAA	5 cut(s)	284, 293, 485, 746, 844
AhlI	ACTAGT	1 cut(s)	397
AjnI	CCWGG	6 cut(s)	8, 235, 575, 703, 822, 868
AluBI	AGCT	3 cut(s)	31, 442, 695
AluI	AGCT	3 cut(s)	31, 442, 695
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	4 cut(s)	28, 31, 502, 572
ApoI	RAATTY	2 cut(s)	123, 593
Asp700I	GAANNNNTTC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	16, 425
AsuII	TTCGAA	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	796
BbvI	GCAGC	4 cut(s)	18, 40, 489, 559
BccI	CCATC	1 cut(s)	851
BciT130I	CCWGG	6 cut(s)	10, 237, 577, 705, 824, 870
BclI	TGATCA	1 cut(s)	720
BcuI	ACTAGT	1 cut(s)	397
BfaI	CTAG	3 cut(s)	393, 398, 812
BfmI	CTRYAG	2 cut(s)	255, 408
BisI	GCNGC	4 cut(s)	29, 32, 503, 573
BlsI	GCNGC	4 cut(s)	30, 33, 504, 574
Bme1390I	CCNGG	6 cut(s)	10, 237, 577, 705, 824, 870
BmrFI	CCNGG	6 cut(s)	10, 237, 577, 705, 824, 870
BmrI	ACTGGG	1 cut(s)	159
BmsI	GCATC	5 cut(s)	339, 367, 722, 741, 775
BmuI	ACTGGG	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	333
Bpu14I	TTCGAA	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	246, 512
BsaWI	WCCGGW	1 cut(s)	834
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 518, 582
Bse1I	ACTGG	2 cut(s)	154, 606
BseBI	CCWGG	6 cut(s)	10, 237, 577, 705, 824, 870
BseDI	CCNNGG	2 cut(s)	246, 512
BseGI	GGATG	3 cut(s)	136, 481, 862
BseLI	CCNNNNNNNGG	3 cut(s)	79, 518, 582
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	2 cut(s)	154, 606
BseSI	GKGCMC	1 cut(s)	796
BseXI	GCAGC	4 cut(s)	18, 40, 489, 559
BsgI	GTGCAG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	835
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	3 cut(s)	79, 518, 582
BsmFI	GGGAC	1 cut(s)	276
BsmI	GAATGC	2 cut(s)	57, 699
BsnI	GGCC	1 cut(s)	16
Bsp119I	TTCGAA	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	796
Bsp143I	GATC	3 cut(s)	155, 403, 720
BspACI	CCGC	2 cut(s)	580, 749
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	201
BspPI	GGATC	1 cut(s)	398
BspT104I	TTCGAA	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	154, 606
BssECI	CCNNGG	2 cut(s)	246, 512
BssMI	GATC	3 cut(s)	155, 403, 720
BssT1I	CCWWGG	2 cut(s)	246, 512
Bst2UI	CCWGG	6 cut(s)	10, 237, 577, 705, 824, 870
Bst4CI	ACNGT	2 cut(s)	533, 798
Bst6I	CTCTTC	1 cut(s)	112
BstBI	TTCGAA	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	631, 697
BstDEI	CTNAG	1 cut(s)	188
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	3 cut(s)	136, 481, 862
BstKTI	GATC	3 cut(s)	158, 406, 723
BstMBI	GATC	3 cut(s)	155, 403, 720
BstMWI	GCNNNNNNNGC	3 cut(s)	586, 626, 785
BstNI	CCWGG	6 cut(s)	10, 237, 577, 705, 824, 870
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	6 cut(s)	8, 235, 575, 703, 822, 868
BstSFI	CTRYAG	2 cut(s)	255, 408
BstSLI	GKGCMC	1 cut(s)	796
BstV1I	GCAGC	4 cut(s)	18, 40, 489, 559
BsuRI	GGCC	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	136, 481, 862
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	2 cut(s)	631, 697
CsiI	ACCWGGT	1 cut(s)	868
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	8 cut(s)	16, 31, 268, 322, 353, 442, 502, 695
CviKI_1	RGCY	8 cut(s)	16, 31, 268, 322, 353, 442, 502, 695
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	3 cut(s)	157, 405, 722
DpnII	GATC	3 cut(s)	155, 403, 720
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
EciI	GGCGGA	1 cut(s)	595
Eco130I	CCWWGG	2 cut(s)	246, 512
Eco32I	GATATC	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	6 cut(s)	8, 235, 575, 703, 822, 868
EcoRV	GATATC	1 cut(s)	168
EcoT14I	CCWWGG	2 cut(s)	246, 512
ErhI	CCWWGG	2 cut(s)	246, 512
FaeI	CATG	1 cut(s)	301
FaiI	YATR	7 cut(s)	299, 312, 365, 566, 802, 804, 820
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	720
FblI	GTMKAC	1 cut(s)	769
Fnu4HI	GCNGC	4 cut(s)	29, 32, 503, 573
FokI	GGATG	3 cut(s)	143, 488, 869
Fsp4HI	GCNGC	4 cut(s)	29, 32, 503, 573
FspBI	CTAG	3 cut(s)	393, 398, 812
GluI	GCNGC	4 cut(s)	29, 32, 503, 573
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	1 cut(s)	835
Hin1II	CATG	1 cut(s)	301
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	2 cut(s)	93, 680
HpaII	CCGG	1 cut(s)	835
HphI	GGTGA	2 cut(s)	16, 425
Hpy166II	GTNNAC	5 cut(s)	435, 454, 529, 536, 770
Hpy188I	TCNGA	4 cut(s)	376, 521, 646, 737
Hpy188III	TCNNGA	6 cut(s)	128, 284, 359, 385, 482, 611
Hpy8I	GTNNAC	5 cut(s)	435, 454, 529, 536, 770
HpyAV	CCTTC	2 cut(s)	479, 483
HpyCH4III	ACNGT	2 cut(s)	533, 798
HpyCH4V	TGCA	7 cut(s)	28, 34, 55, 330, 505, 656, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	586, 626, 785
HpyF3I	CTNAG	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	301
Ksp22I	TGATCA	1 cut(s)	720
Kzo9I	GATC	3 cut(s)	155, 403, 720
LmnI	GCTCC	2 cut(s)	586, 847
Lsp1109I	GCAGC	4 cut(s)	18, 40, 489, 559
LweI	GCATC	5 cut(s)	339, 367, 722, 741, 775
MabI	ACCWGGT	1 cut(s)	868
MaeI	CTAG	3 cut(s)	393, 398, 812
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	3 cut(s)	157, 405, 722
MboI	GATC	3 cut(s)	155, 403, 720
MboII	GAAGA	2 cut(s)	129, 653
MhlI	GDGCHC	1 cut(s)	796
MluCI	AATT	7 cut(s)	123, 144, 325, 522, 593, 601, 687
MlyI	GAGTC	1 cut(s)	689
MmeI	TCCRAC	2 cut(s)	499, 735
MnlI	CCTC	5 cut(s)	6, 83, 253, 576, 854
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	5 cut(s)	242, 549, 600, 690, 880
MslI	CAYNNNNRTG	2 cut(s)	309, 855
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	1 cut(s)	835
MspR9I	CCNGG	6 cut(s)	10, 237, 577, 705, 824, 870
Mva1269I	GAATGC	2 cut(s)	57, 699
MvaI	CCWGG	6 cut(s)	10, 237, 577, 705, 824, 870
MwoI	GCNNNNNNNGC	3 cut(s)	586, 626, 785
NdeII	GATC	3 cut(s)	155, 403, 720
NlaIII	CATG	1 cut(s)	301
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	4
NspV	TTCGAA	1 cut(s)	115
PctI	GAATGC	2 cut(s)	57, 699
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	703
PkrI	GCNGC	4 cut(s)	30, 33, 504, 574
PleI	GAGTC	1 cut(s)	688
PpsI	GAGTC	1 cut(s)	688
Psp6I	CCWGG	6 cut(s)	8, 235, 575, 703, 822, 868
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	6 cut(s)	8, 235, 575, 703, 822, 868
PvuII	CAGCTG	1 cut(s)	31
RseI	CAYNNNNRTG	2 cut(s)	309, 855
SaqAI	TTAA	5 cut(s)	242, 549, 600, 690, 880
SatI	GCNGC	4 cut(s)	29, 32, 503, 573
Sau3AI	GATC	3 cut(s)	155, 403, 720
SchI	GAGTC	1 cut(s)	689
ScrFI	CCNGG	6 cut(s)	10, 237, 577, 705, 824, 870
SduI	GDGCHC	1 cut(s)	796
SetI	ASST	8 cut(s)	33, 252, 415, 444, 494, 697, 775, 871
SexAI	ACCWGGT	1 cut(s)	868
SfaNI	GCATC	5 cut(s)	339, 367, 722, 741, 775
SfcI	CTRYAG	2 cut(s)	255, 408
SfuI	TTCGAA	1 cut(s)	115
SmiMI	CAYNNNNRTG	2 cut(s)	309, 855
SpeI	ACTAGT	1 cut(s)	397
Sse9I	AATT	7 cut(s)	123, 144, 325, 522, 593, 601, 687
SsiI	CCGC	2 cut(s)	580, 749
SspMI	CTAG	3 cut(s)	393, 398, 812
StyD4I	CCNGG	6 cut(s)	8, 235, 575, 703, 822, 868
StyI	CCWWGG	2 cut(s)	246, 512
TaaI	ACNGT	2 cut(s)	533, 798
TaqI	TCGA	1 cut(s)	115
TasI	AATT	7 cut(s)	123, 144, 325, 522, 593, 601, 687
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	5 cut(s)	242, 549, 600, 690, 880
Tru9I	TTAA	5 cut(s)	242, 549, 600, 690, 880
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	4 cut(s)	28, 31, 502, 572
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	147, 173, 293
TspRI	CASTG	1 cut(s)	103
XapI	RAATTY	2 cut(s)	123, 593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	769
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	3 cut(s)	393, 398, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.