RchiOBHm_Chr5g0002991
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008201
Physical Location & Seq
Forward (+)
1765045 .. 1769236
4192 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28432

Sequence Viewer

Length: 417 bp
ATGATAGTCACTCTCCGCCTCTCCTTCATCGCTCTCTCTGTACCACGCAACCGCGCCACACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTCCCTCCTTGATGGGATCTCCCTCAGTCTCTCACTTTGTCAACTTGACACTTGTTGATCTTCCTGGGCTTACAAAAGTTTTTGTTGAGGGTCAGCTCGATAGTATTATGCAGGACATTGAAAATATGGTTCGCTCCTACATTGAGAAGCCCAACAGTATAATTTCAGCAATTTCACCTGCTAATCAAGATCTTGCTACATCTGATGCAATTAAAATCCCTTGTGAAGTGGATCCAATAGGTGAGTCCAAAAATTCACATCCAATTTTCTTATTTGTTCATGCTTTCCAAAAAAAATTCATCTGGTACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

138

Amino Acids

15.2

Weight (kDa)

6.26

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 46 - 117 1.9e-13 Dynamin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 289
Acc36I ACCTGC 1 cut(s) 289
AccII CGCG 1 cut(s) 54
AciI CCGC 2 cut(s) 16, 52
AclWI GGATC 3 cut(s) 127, 329, 342
AcsI RAATTY 2 cut(s) 355, 398
AfaI GTAC 2 cut(s) 42, 410
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 3 cut(s) 127, 329, 342
ApoI RAATTY 2 cut(s) 355, 398
AspLEI GCGC 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 270, 356
BamHI GGATCC 1 cut(s) 334
BccI CCATC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 136
BfuAI ACCTGC 1 cut(s) 289
BglII AGATCT 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 136
Bsp143I GATC 4 cut(s) 119, 160, 292, 334
BspACI CCGC 2 cut(s) 16, 52
BspCNI CTCAG 1 cut(s) 140
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 336
BspMI ACCTGC 1 cut(s) 289
BspPI GGATC 3 cut(s) 127, 329, 342
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 4 cut(s) 119, 160, 292, 334
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 4 cut(s) 122, 163, 295, 337
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 4 cut(s) 119, 160, 292, 334
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstUI CGCG 1 cut(s) 54
BstX2I RGATCY 3 cut(s) 119, 292, 334
BstYI RGATCY 3 cut(s) 119, 292, 334
BtgZI GCGATG 1 cut(s) 13
BtsCI GGATG 1 cut(s) 361
BveI ACCTGC 1 cut(s) 289
CfoI GCGC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 41, 409
CviAII CATG 1 cut(s) 383
CviJI RGCY 3 cut(s) 172, 199, 253
CviKI_1 RGCY 3 cut(s) 172, 199, 253
CviQI GTAC 2 cut(s) 41, 409
DdeI CTNAG 1 cut(s) 127
DpnI GATC 4 cut(s) 121, 162, 294, 336
DpnII GATC 4 cut(s) 119, 160, 292, 334
EciI GGCGGA 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 166
FaeI CATG 1 cut(s) 386
FaiI YATR 4 cut(s) 212, 230, 263, 384
FatI CATG 1 cut(s) 382
FokI GGATG 1 cut(s) 348
GlaI GCGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 386
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 1 cut(s) 347
HphI GGTGA 2 cut(s) 270, 356
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 2 cut(s) 214, 311
HpyF3I CTNAG 1 cut(s) 127
Hsp92II CATG 1 cut(s) 386
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 4 cut(s) 119, 160, 292, 334
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 5 cut(s) 153, 180, 200, 294, 391
LweI GCATC 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 7
MalI GATC 4 cut(s) 121, 162, 294, 336
MboI GATC 4 cut(s) 119, 160, 292, 334
MboII GAAGA 1 cut(s) 155
MflI RGATCY 3 cut(s) 119, 292, 334
MluCI AATT 6 cut(s) 264, 273, 312, 355, 366, 398
MlyI GAGTC 1 cut(s) 356
MnlI CCTC 7 cut(s) 29, 72, 106, 114, 118, 136, 184
MseI TTAA 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 54
NdeII GATC 4 cut(s) 119, 160, 292, 334
NlaIII CATG 1 cut(s) 386
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 7
PaqCI CACCTGC 1 cut(s) 289
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 336
PsuI RGATCY 3 cut(s) 119, 292, 334
RsaI GTAC 2 cut(s) 42, 410
RsaNI GTAC 2 cut(s) 41, 409
SaqAI TTAA 1 cut(s) 315
Sau3AI GATC 4 cut(s) 119, 160, 292, 334
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 168
SetI ASST 4 cut(s) 64, 201, 283, 346
SfaNI GCATC 1 cut(s) 298
Sse9I AATT 6 cut(s) 264, 273, 312, 355, 366, 398
SsiI CCGC 2 cut(s) 16, 52
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 260
TaqI TCGA 1 cut(s) 201
TasI AATT 6 cut(s) 264, 273, 312, 355, 366, 398
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseFI GTSAC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 3 cut(s) 16, 371, 391
XapI RAATTY 2 cut(s) 355, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.