Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008201

Physical Location & Seq

Genomic Coordinates Forward (+)

28846709 .. 28850686

Gene Structure 3978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00023360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGATGGTTTGTCTTTTGGCAGTTGTCAATTTAACATTGATAGATTTGCCTGGCTTAACTAAGGTTTACATTCATTTCTTATTTGTTGAATACTTTGCTTATAGATGTTTGTTACTGACAGAGGGGCAGCCAGATAGTATTGTTCAAGACATAGAAAATATGGTTCGTTCTTATATAGCAAAGCCTAACTGCATAATTCTAGCAATAACTCCTGCGAATCAAGACGTAGCAACATCAGATGCTATCAAGATCGCTAGAGAAGTTGATCCTACAGCTTCAATTCCCGCAACTATGGCGGTGTATTGCCGCCGTAACATCACGATCCCTCTTCCGCAGCTTCAAGTCCGCAACAATGGCAGCGTGTTGCTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

124

Amino Acids

13.76

Weight (kDa)

5.67

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	4 - 98	1e-14	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008201)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21040 FvH4_5g21040 FvH4_5g21040 FvH4_5g21040
malus_domestica	MD00G1084600.v1.1 MD00G1148500.v1.1
prunus_persica	Prupe.5G047800_v2.0.a1
pyrus_communis	pycom06g03450
rosa_chinensis	RchiOBHm_Chr5g0002991 RchiOBHm_Chr7g0208101
rosa_laevigata	RLG00000003255
rosa_multiflora	Rmu_sc0000706.1_g000043
rosa_roxburghii	Rroxscaffold_1G00005290 Rroxscaffold_1G00023360 Rroxscaffold_3G00250820
rosa_rugosa	Rorug04G0360400 Rorug07G0101300
rosa_samantha	Rh7AG234600 Rh7BG231000 Rh7CG250600 Rh7DG241400
rosa_wichuraiana	Rw5G034820 Rw7G020070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	285, 296, 307, 332, 346
AclWI	GGATC	2 cut(s)	260, 316
AgsI	TTSAA	4 cut(s)	89, 146, 279, 341
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	2 cut(s)	275, 337
AluI	AGCT	2 cut(s)	275, 337
AlwI	GGATC	2 cut(s)	260, 316
ApeKI	GCWGC	4 cut(s)	127, 334, 357, 367
BbvI	GCAGC	4 cut(s)	139, 346, 354, 369
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	51
BfaI	CTAG	2 cut(s)	200, 255
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	5 cut(s)	128, 307, 335, 358, 368
BlsI	GCNGC	5 cut(s)	129, 308, 336, 359, 369
Bme1390I	CCNGG	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	51
BseXI	GCAGC	4 cut(s)	139, 346, 354, 369
Bsp143I	GATC	3 cut(s)	249, 265, 321
BspACI	CCGC	5 cut(s)	285, 296, 307, 332, 346
BspPI	GGATC	2 cut(s)	260, 316
BssMI	GATC	3 cut(s)	249, 265, 321
Bst2UI	CCWGG	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	60
BstKTI	GATC	3 cut(s)	252, 268, 324
BstMBI	GATC	3 cut(s)	249, 265, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 354
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	4 cut(s)	139, 346, 354, 369
CviJI	RGCY	5 cut(s)	54, 130, 184, 275, 337
CviKI_1	RGCY	5 cut(s)	54, 130, 184, 275, 337
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	3 cut(s)	251, 267, 323
DpnII	GATC	3 cut(s)	249, 265, 321
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	49
FaiI	YATR	7 cut(s)	102, 152, 161, 174, 176, 194, 293
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	5 cut(s)	128, 307, 335, 358, 368
Fsp4HI	GCNGC	5 cut(s)	128, 307, 335, 358, 368
FspBI	CTAG	2 cut(s)	200, 255
GluI	GCNGC	5 cut(s)	128, 307, 335, 358, 368
HinfI	GANTC	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	4 cut(s)	146, 221, 247, 319
Hpy8I	GTNNAC	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 354
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	225
Kzo9I	GATC	3 cut(s)	249, 265, 321
LpnPI	CCDG	4 cut(s)	36, 63, 144, 225
Lsp1109I	GCAGC	4 cut(s)	139, 346, 354, 369
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	200, 255
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	111, 311
MalI	GATC	3 cut(s)	251, 267, 323
MboI	GATC	3 cut(s)	249, 265, 321
MboII	GAAGA	1 cut(s)	320
MluCI	AATT	3 cut(s)	28, 195, 279
MnlI	CCTC	2 cut(s)	115, 336
MseI	TTAA	2 cut(s)	32, 56
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	293, 354
NdeII	GATC	3 cut(s)	249, 265, 321
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	5 cut(s)	129, 308, 336, 359, 369
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	32, 56
SatI	GCNGC	5 cut(s)	128, 307, 335, 358, 368
Sau3AI	GATC	3 cut(s)	249, 265, 321
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	4 cut(s)	66, 228, 277, 339
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	270
Sse9I	AATT	3 cut(s)	28, 195, 279
SsiI	CCGC	5 cut(s)	285, 296, 307, 332, 346
SspMI	CTAG	2 cut(s)	200, 255
StyD4I	CCNGG	1 cut(s)	49
TaiI	ACGT	1 cut(s)	228
TasI	AATT	3 cut(s)	28, 195, 279
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	2 cut(s)	32, 56
Tru9I	TTAA	2 cut(s)	32, 56
TseI	GCWGC	4 cut(s)	127, 334, 357, 367
TspDTI	ATGAA	1 cut(s)	62
XspI	CTAG	2 cut(s)	200, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.