Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019258

Physical Location & Seq

Genomic Coordinates Forward (+)

15092597 .. 15093319

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGACAATGATGATTATAAATTTTATTTAAAGTTTACATGTGGAATCTTCAGCCTCATCCCTAGTGTTCTTCTTGCCATCTGTTGTGGCATCCACCACCGCCCCCATATCGTCGAACTCAACATAACGCAGGCCTCGCTGTCTTGTACCAACTTCACCACTACCTTCGCAACCAATGACACCCTCCACTACAATCTCGACCTCAATATCACTCTCCGAAACTCCAACAAGTTCTACAGTGTCCATCACCAGAAGATCGAAGCTCTGACCTATTACAGAAACCAGGGCTATGGATATACCACGCTGAACTTGAACTCTTTTTCCCAAGAGGCTATGTCCGACGCTGTTCCTACACCAATGTCATTTAAAGAGCAACACTCGGTGATTGACCCGGCGGCCGAGGATGAGGATATTGTAGTTGTCAAGCTCTACCTTGAGAACAAATACAAGACTCGAGTCATGGGTTGGCAAGCCAAATCCGAGTTCGCGCGTCACTTGAGAGTAGTTCCTTCGATAAATGGACTGAAATTGGCTGCTAGTTCTGAGACTGCACAACCGTGCAACAACATAGATCATCGTCTTTCTTTCCCTAAACCTTTGAAGTTTTATTTGAAGGTTGCATTTTTGACGGCTTCAATGATATGGTTATTGCGTATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

220

Amino Acids

25.2

Weight (kDa)

8.22

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019258)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02561
rosa_chinensis	RchiOBHm_Chr3g0469351
rosa_laevigata	RLG00000002788 RLG00000020606 RLG00000024357
rosa_rugosa	Rorug03G0100800
rosa_samantha	Rh3DG201800 Rh6DG062100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AccII	CGCG	2 cut(s)	488, 490
AciI	CCGC	2 cut(s)	100, 395
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	34
AdeI	CACNNNGTG	1 cut(s)	382
AfaI	GTAC	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	38
AgsI	TTSAA	4 cut(s)	313, 601, 613, 636
AjnI	CCWGG	1 cut(s)	282
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AleI	CACNNNNGTG	1 cut(s)	556
AloI	GAACNNNNNNTCC	2 cut(s)	305, 337
AluBI	AGCT	2 cut(s)	263, 427
AluI	AGCT	2 cut(s)	263, 427
Alw26I	GTCTC	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	453
AoxI	GGCC	2 cut(s)	132, 396
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	3 cut(s)	148, 239, 394
AvaI	CYCGRG	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	2 cut(s)	86, 252
BceAI	ACGGC	1 cut(s)	645
BciT130I	CCWGG	1 cut(s)	284
BcnI	CCSGG	1 cut(s)	392
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	2 cut(s)	63, 537
BfmI	CTRYAG	1 cut(s)	235
BisI	GCNGC	2 cut(s)	396, 534
BlsI	GCNGC	2 cut(s)	397, 535
Bme1390I	CCNGG	2 cut(s)	284, 392
BmeT110I	CYCGRG	1 cut(s)	453
BmrFI	CCNGG	2 cut(s)	284, 392
BmsI	GCATC	1 cut(s)	99
BoxI	GACNNNNGTC	1 cut(s)	455
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
BpuEI	CTTGAG	2 cut(s)	455, 517
BpuMI	CCSGG	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	283, 399
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	283, 399
BseGI	GGATG	3 cut(s)	57, 90, 409
BseMII	CTCAG	1 cut(s)	534
BseX3I	CGGCCG	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	520
BsgI	GTGCAG	1 cut(s)	534
Bsh1236I	CGCG	2 cut(s)	488, 490
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	2 cut(s)	134, 398
BsiEI	CGRYCG	1 cut(s)	399
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	539
BsnI	GGCC	2 cut(s)	134, 398
BsoBI	CYCGRG	1 cut(s)	453
Bsp143I	GATC	2 cut(s)	255, 571
BspACI	CCGC	2 cut(s)	100, 395
BspANI	GGCC	2 cut(s)	134, 398
BspCNI	CTCAG	1 cut(s)	535
BspFNI	CGCG	2 cut(s)	488, 490
BssECI	CCNNGG	2 cut(s)	283, 399
BssMI	GATC	2 cut(s)	255, 571
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	239, 558
BstC8I	GCNNGC	2 cut(s)	132, 471
BstDEI	CTNAG	1 cut(s)	543
BstF5I	GGATG	3 cut(s)	57, 90, 409
BstFNI	CGCG	2 cut(s)	488, 490
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	2 cut(s)	258, 574
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	2 cut(s)	255, 571
BstMCI	CGRYCG	1 cut(s)	399
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	42
BstPAI	GACNNNNGTC	1 cut(s)	455
BstSCI	CCNGG	2 cut(s)	282, 390
BstSFI	CTRYAG	1 cut(s)	235
BstUI	CGCG	2 cut(s)	488, 490
BstV1I	GCAGC	1 cut(s)	520
BstXI	CCANNNNNNTGG	1 cut(s)	290
BstZI	CGGCCG	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	134, 398
BtsCI	GGATG	3 cut(s)	57, 90, 409
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	132, 471
CfoI	GCGC	1 cut(s)	490
CseI	GACGC	2 cut(s)	350, 479
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	2 cut(s)	39, 460
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	2 cut(s)	257, 573
DpnII	GATC	2 cut(s)	255, 571
DraI	TTTAAA	2 cut(s)	30, 367
DraIII	CACNNNGTG	1 cut(s)	382
EaeI	YGGCCR	1 cut(s)	396
EagI	CGGCCG	1 cut(s)	396
EclXI	CGGCCG	1 cut(s)	396
Eco147I	AGGCCT	1 cut(s)	134
Eco52I	CGGCCG	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	34
Eco88I	CYCGRG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	42, 463
FatI	CATG	2 cut(s)	38, 459
Fnu4HI	GCNGC	2 cut(s)	396, 534
FokI	GGATG	3 cut(s)	44, 77, 416
Fsp4HI	GCNGC	2 cut(s)	396, 534
FspBI	CTAG	2 cut(s)	63, 537
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	2 cut(s)	396, 534
HaeIII	GGCC	2 cut(s)	134, 398
HapII	CCGG	1 cut(s)	392
HgaI	GACGC	2 cut(s)	350, 479
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	2 cut(s)	42, 463
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HinfI	GANTC	3 cut(s)	45, 451, 456
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	3 cut(s)	148, 239, 394
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	5 cut(s)	218, 267, 340, 481, 544
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	36
Hpy99I	CGWCG	2 cut(s)	116, 344
HpyAV	CCTTC	3 cut(s)	175, 519, 607
HpyCH4III	ACNGT	2 cut(s)	239, 558
HpyCH4V	TGCA	3 cut(s)	551, 561, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	543
Hsp92II	CATG	2 cut(s)	42, 463
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	2 cut(s)	255, 571
LpnPI	CCDG	5 cut(s)	116, 263, 269, 296, 405
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	2 cut(s)	63, 537
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	2 cut(s)	257, 573
MboI	GATC	2 cut(s)	255, 571
MboII	GAAGA	3 cut(s)	40, 62, 265
MluCI	AATT	2 cut(s)	20, 527
MlyI	GAGTC	2 cut(s)	445, 465
MmeI	TCCRAC	2 cut(s)	249, 363
MnlI	CCTC	7 cut(s)	65, 145, 194, 212, 322, 394, 400
MseI	TTAA	2 cut(s)	29, 366
MslI	CAYNNNNRTG	1 cut(s)	556
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	2 cut(s)	284, 392
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	2 cut(s)	488, 490
MwoI	GCNNNNNNNGC	1 cut(s)	136
NciI	CCSGG	1 cut(s)	392
NdeII	GATC	2 cut(s)	255, 571
NlaIII	CATG	2 cut(s)	42, 463
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	491
NspI	RCATGY	1 cut(s)	42
OliI	CACNNNNGTG	1 cut(s)	556
PaeR7I	CTCGAG	1 cut(s)	453
PceI	AGGCCT	1 cut(s)	134
PciI	ACATGT	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	397, 535
PleI	GAGTC	2 cut(s)	445, 464
PpsI	GAGTC	2 cut(s)	445, 464
PscI	ACATGT	1 cut(s)	38
PshAI	GACNNNNGTC	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspXI	VCTCGAGB	1 cut(s)	453
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	556
SaqAI	TTAA	2 cut(s)	29, 366
SatI	GCNGC	2 cut(s)	396, 534
Sau3AI	GATC	2 cut(s)	255, 571
SchI	GAGTC	2 cut(s)	445, 465
ScrFI	CCNGG	2 cut(s)	284, 392
SetI	ASST	8 cut(s)	167, 204, 265, 272, 429, 435, 598, 618
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	1 cut(s)	235
Sfr274I	CTCGAG	1 cut(s)	453
SlaI	CTCGAG	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	556
SmlI	CTYRAG	3 cut(s)	434, 453, 496
SmoI	CTYRAG	3 cut(s)	434, 453, 496
Sse9I	AATT	2 cut(s)	20, 527
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	2 cut(s)	100, 395
SspMI	CTAG	2 cut(s)	63, 537
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	282, 390
TaaI	ACNGT	2 cut(s)	239, 558
TaqI	TCGA	5 cut(s)	114, 198, 258, 454, 512
TasI	AATT	2 cut(s)	20, 527
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	2 cut(s)	29, 366
Tru9I	TTAA	2 cut(s)	29, 366
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	1 cut(s)	491
TspRI	CASTG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	42
XhoI	CTCGAG	1 cut(s)	453
XspI	CTAG	2 cut(s)	63, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.