RchiOBHm_Chr3g0470301

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0014232
Physical Location & Seq
Forward (+)
16226475 .. 16227508
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGGGAGGCAAGTGCCCGCACAGAAGCGTTAAGAAGAGAAGATACTCCCACAAGACTCACCGCCGCAGCAAGTTCCTCGTCAAAGGCGACGATTTGGTGTACGATGGGCTCAAGAAAGCAGAGGATCAGATGACCACGCCGGTGTTGCCCGTCGATGAAGATCTACCTGGAATGGGCCAATACTACTGTCTTCACTGCGACCGATATTTTGCTAATGTGACTGTGAGGGATGAGCATTTCAAGACCAAGCGTCACAGGAAGCGAGTAAAGCAACTGATGGAAGCACCGCACACCCAACTGGATGCTGATTTAGCTGCTGGGATGGGTATGCCAGATAACGGCCCTAAGCTTATGTCATTCTGA

Protein Analysis

120

Amino Acids

13.86

Weight (kDa)

9.54

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_jaz PF12171 60 - 86 4.8e-09 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36930
fragaria_vesca FvH4_6g16440
malus_domestica MD00G1155400.v1.1 MD12G1112600.v1.1
prunus_persica Prupe.7G129700_v2.0.a1 Prupe.7G129700_v2.0.a1
pyrus_communis pycom04g08760
rosa_chinensis RchiOBHm_Chr3g0470301
rosa_laevigata RLG00000024280
rosa_multiflora Rmu_sc0002659.1_g000001
rosa_roxburghii Rroxscaffold_6G00410970
rosa_rugosa Rorug03G0108000
rosa_samantha Rh3AG157700 Rh3BG182000 Rh3CG172700 Rh3DG192900
rosa_wichuraiana Rw3G015000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 17, 61, 64, 287
AclWI GGATC 1 cut(s) 132
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 173, 338
AgsI TTSAA 1 cut(s) 241
AhdI GACNNNNNGTC 1 cut(s) 249
AjnI CCWGG 1 cut(s) 166
AleI CACNNNNGTG 1 cut(s) 140
AluBI AGCT 2 cut(s) 314, 349
AluI AGCT 2 cut(s) 314, 349
AlwI GGATC 1 cut(s) 132
AoxI GGCC 2 cut(s) 175, 340
ApeKI GCWGC 2 cut(s) 66, 314
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AspS9I GGNCC 2 cut(s) 175, 341
AsuHPI GGTGA 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 111
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BbsI GAAGAC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 78, 301
BccI CCATC 3 cut(s) 98, 271, 316
BceAI ACGGC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 168
BglII AGATCT 1 cut(s) 160
BisI GCNGC 3 cut(s) 64, 67, 315
BlsI GCNGC 3 cut(s) 65, 68, 316
Bme1390I CCNGG 1 cut(s) 168
BmeRI GACNNNNNGTC 1 cut(s) 249
BmgT120I GGNCC 2 cut(s) 175, 341
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 182
Bpu10I CCTNAGC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 159
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 338
Bse118I RCCGGY 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 159
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 3 cut(s) 235, 307, 327
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 173, 338
BseNI ACTGG 1 cut(s) 303
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 2 cut(s) 78, 301
BseYI CCCAGC 1 cut(s) 317
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 177, 342
BsiEI CGRYCG 1 cut(s) 202
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 173, 338
BsnI GGCC 2 cut(s) 177, 342
Bsp1286I GDGCHC 2 cut(s) 17, 111
Bsp143I GATC 2 cut(s) 124, 160
BspACI CCGC 4 cut(s) 17, 61, 64, 287
BspANI GGCC 2 cut(s) 177, 342
BspPI GGATC 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 139
BsrI ACTGG 1 cut(s) 303
BssAI RCCGGY 1 cut(s) 139
BssMI GATC 2 cut(s) 124, 160
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 188, 223
Bst6I CTCTTC 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 3 cut(s) 235, 307, 327
BstKTI GATC 2 cut(s) 127, 163
BstMBI GATC 2 cut(s) 124, 160
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 3 cut(s) 145, 268, 311
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 78, 301
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 2 cut(s) 177, 342
BtsCI GGATG 3 cut(s) 235, 307, 327
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 139
Cfr13I GGNCC 2 cut(s) 175, 341
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 100
CviJI RGCY 5 cut(s) 109, 177, 314, 342, 349
CviKI_1 RGCY 5 cut(s) 109, 177, 314, 342, 349
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 345
DpnI GATC 2 cut(s) 126, 162
DpnII GATC 2 cut(s) 124, 160
DriI GACNNNNNGTC 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 29
Eam1105I GACNNNNNGTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 111
FaiI YATR 2 cut(s) 329, 353
FauI CCCGC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 64, 67, 315
FokI GGATG 3 cut(s) 242, 314, 334
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 3 cut(s) 64, 67, 315
GluI GCNGC 3 cut(s) 64, 67, 315
GsaI CCCAGC 1 cut(s) 321
HaeIII GGCC 2 cut(s) 177, 342
HapII CCGG 1 cut(s) 140
HgaI GACGC 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 1 cut(s) 55
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 129, 362
Hpy188III TCNNGA 2 cut(s) 112, 241
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 2 cut(s) 92, 155
HpyCH4III ACNGT 2 cut(s) 188, 223
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 268, 311
HpyF3I CTNAG 1 cut(s) 345
Kzo9I GATC 2 cut(s) 124, 160
LpnPI CCDG 7 cut(s) 153, 153, 180, 241, 284, 303, 345
Lsp1109I GCAGC 2 cut(s) 78, 301
LweI GCATC 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 217, 251
MalI GATC 2 cut(s) 126, 162
MboI GATC 2 cut(s) 124, 160
MboII GAAGA 4 cut(s) 46, 51, 170, 182
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 2 cut(s) 17, 111
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 3 cut(s) 86, 115, 219
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 140
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 145, 268, 311
NdeII GATC 2 cut(s) 124, 160
NmuCI GTSAC 2 cut(s) 217, 251
OliI CACNNNNGTG 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PkrI GCNGC 3 cut(s) 65, 68, 316
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 317
PspGI CCWGG 1 cut(s) 166
PspPI GGNCC 2 cut(s) 175, 341
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 3 cut(s) 64, 67, 315
Sau3AI GATC 2 cut(s) 124, 160
Sau96I GGNCC 2 cut(s) 175, 341
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 2 cut(s) 17, 111
SetI ASST 3 cut(s) 169, 316, 351
SfaNI GCATC 1 cut(s) 292
SgrAI CRCCGGYG 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SsiI CCGC 4 cut(s) 17, 61, 64, 287
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 188, 223
TaqI TCGA 1 cut(s) 153
TaqII GACCGA 1 cut(s) 216
TauI GCSGC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 1 cut(s) 200
TseFI GTSAC 2 cut(s) 217, 251
TseI GCWGC 2 cut(s) 66, 314
Tsp45I GTSAC 2 cut(s) 217, 251
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.