RchiOBHm_Chr3g0474321

Anthocyanidin 5,3-O-glucosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016962
Physical Location & Seq
Forward (+)
19974437 .. 19975612
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGGTGGCGTGGCCGCTCTATGCAGAGCAGCATCTGAACAGGAATGTTCTTGTGAATGACATGAAAATGGCGATTGATGTGGAGCAGAGAGAGGAAGATGGGTTCGTGACCCGGGATGAAGTGGAGATAAGAGTTACAGAGTTGATGGAGTCGGAAAATGGAAGAGAGCTCAAAGAGAGGAGTTTGAAAATTGGGGAGATGGCTTTGGGTGCTCTAGGAGATCTTGGTTCCTCAATATCTGCTCTGCTTTTGATGATAGATTGTTTGGGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

91

Amino Acids

10.27

Weight (kDa)

4.43

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 16
AciI CCGC 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 11
AgsI TTSAA 1 cut(s) 187
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw21I GWGCWC 2 cut(s) 171, 214
AlwNI CAGNNNCTG 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 28
AsuC2I CCSGG 2 cut(s) 112, 113
AvaI CYCGRG 1 cut(s) 111
BanII GRGCYC 1 cut(s) 171
Bbv12I GWGCWC 2 cut(s) 171, 214
BbvI GCAGC 1 cut(s) 40
BccI CCATC 3 cut(s) 92, 139, 193
BcnI CCSGG 2 cut(s) 112, 113
BfaI CTAG 1 cut(s) 215
BglII AGATCT 1 cut(s) 220
BisI GCNGC 2 cut(s) 14, 29
BlsI GCNGC 2 cut(s) 15, 30
Bme1390I CCNGG 2 cut(s) 112, 113
BmeT110I CYCGRG 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 2 cut(s) 112, 113
BmsI GCATC 1 cut(s) 40
BpuMI CCSGG 2 cut(s) 112, 113
BsaJI CCNNGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 13
BsiHKAI GWGCWC 2 cut(s) 171, 214
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 112
BsnI GGCC 1 cut(s) 13
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 171, 214
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 229
BsrBI CCGCTC 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 157
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 110, 111
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 121
CaiI CAGNNNCTG 1 cut(s) 34
Cfr9I CCCGGG 1 cut(s) 111
CviAII CATG 1 cut(s) 61
CviJI RGCY 3 cut(s) 13, 169, 203
CviKI_1 RGCY 3 cut(s) 13, 169, 203
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 171
FaeI CATG 1 cut(s) 64
FaiI YATR 2 cut(s) 21, 62
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 14, 29
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 2 cut(s) 14, 29
FspBI CTAG 1 cut(s) 215
GluI GCNGC 2 cut(s) 14, 29
HaeIII GGCC 1 cut(s) 13
HapII CCGG 1 cut(s) 112
Hin1II CATG 1 cut(s) 64
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 36, 154
Hpy188III TCNNGA 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
Hsp92II CATG 1 cut(s) 64
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 25, 125
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 106, 133
MalI GATC 1 cut(s) 222
MbiI CCGCTC 1 cut(s) 16
MboI GATC 1 cut(s) 220
MboII GAAGA 2 cut(s) 107, 174
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 171, 214
MluCI AATT 1 cut(s) 189
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 3 cut(s) 85, 171, 241
MslI CAYNNNNRTG 1 cut(s) 65
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 112, 113
MwoI GCNNNNNNNGC 1 cut(s) 209
NciI CCSGG 2 cut(s) 112, 113
NdeII GATC 1 cut(s) 220
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 106
PkrI GCNGC 2 cut(s) 15, 30
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 65
SacI GAGCTC 1 cut(s) 171
SatI GCNGC 2 cut(s) 14, 29
Sau3AI GATC 1 cut(s) 220
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 112, 113
SduI GDGCHC 2 cut(s) 171, 214
SetI ASST 1 cut(s) 171
SfaNI GCATC 1 cut(s) 40
SmaI CCCGGG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 65
Sse9I AATT 1 cut(s) 189
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 215
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 110, 111
TasI AATT 1 cut(s) 189
TauI GCSGC 1 cut(s) 16
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 77, 132
TspMI CCCGGG 1 cut(s) 111
XmaI CCCGGG 1 cut(s) 111
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.