Rh3DG215700

Anthocyanidin 5,3-O-glucosyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
19839391 .. 19843007
3617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG215700.1

Sequence Viewer

Length: 258 bp
ATGGCGATTGATGTGGAGCAGAGAGAGGAAGATGGGTTCGTGACCGGGGATGAAGTGGAGATAAGAGTTACAGAGTTGATGGAGTCGGAAAATGGAAGAGAGCTCAAAGAGAGGAGTTTGAAAATTGGGGAGATGGCTTTGGGTGCTCTGGGAGATCTTGGTTCCTCAATATCTGCTCTGCTTTTGATGATAGATTGTTTGGTCCGTTGTTCTGACGGCTCGGCATCCTTTGCAAAGACGAAGGTCGGGCTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.16

Weight (kDa)

4.48

Isoelectric Point (pI)

27.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 121
AloI GAACNNNNNNTCC 2 cut(s) 20, 52
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw21I GWGCWC 2 cut(s) 105, 148
AspS9I GGNCC 1 cut(s) 202
AsuC2I CCSGG 1 cut(s) 46
AvaII GGWCC 1 cut(s) 202
BanII GRGCYC 2 cut(s) 105, 252
Bbv12I GWGCWC 2 cut(s) 105, 148
BccI CCATC 3 cut(s) 26, 73, 127
BceAI ACGGC 1 cut(s) 232
BcnI CCSGG 1 cut(s) 46
BglII AGATCT 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 233
BoxI GACNNNNGTC 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 55, 224
BseRI GAGGAG 1 cut(s) 127
BsiHKAI GWGCWC 2 cut(s) 105, 148
BsiSI CCGG 1 cut(s) 45
Bsp1286I GDGCHC 3 cut(s) 105, 148, 252
Bsp143I GATC 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 230
BstF5I GGATG 2 cut(s) 55, 224
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 2 cut(s) 143, 230
BstPAI GACNNNNGTC 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 44
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BtsCI GGATG 2 cut(s) 55, 224
Cfr13I GGNCC 1 cut(s) 202
CviJI RGCY 4 cut(s) 103, 137, 219, 250
CviKI_1 RGCY 4 cut(s) 103, 137, 219, 250
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 105, 252
Eco47I GGWCC 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoT38I GRGCYC 2 cut(s) 105, 252
FokI GGATG 2 cut(s) 62, 211
FriOI GRGCYC 2 cut(s) 105, 252
HapII CCGG 1 cut(s) 45
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 45
Hpy188I TCNGA 2 cut(s) 88, 214
Hpy188III TCNNGA 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 235
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 230
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 2 cut(s) 58, 134
LweI GCATC 1 cut(s) 233
MaeIII GTNAC 2 cut(s) 40, 67
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 2 cut(s) 41, 108
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 3 cut(s) 105, 148, 252
MluCI AATT 1 cut(s) 123
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 3 cut(s) 19, 105, 175
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 143, 230
NciI CCSGG 1 cut(s) 46
NdeII GATC 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 163
NmeAIII GCCGAG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 40
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PshAI GACNNNNGTC 1 cut(s) 242
Psp124BI GAGCTC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 202
PsuI RGATCY 1 cut(s) 154
SacI GAGCTC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 3 cut(s) 105, 148, 252
SetI ASST 2 cut(s) 105, 246
SfaNI GCATC 1 cut(s) 233
SgeI CNNG 6 cut(s) 52, 57, 58, 161, 170, 232
SinI GGWCC 1 cut(s) 202
Sse9I AATT 1 cut(s) 123
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 44
TasI AATT 1 cut(s) 123
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 66
TspGWI ACGGA 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.