Rmu_sc0000778.1_g000004

Anthocyanidin 5,3-O-glucosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000778.1
OG0016962
Physical Location & Seq
Reverse (-)
23808 .. 24227
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000778.1_g000004.1.cds

Sequence Viewer

Length: 420 bp
atggaaggaaaatggaagaaggaagtcgtgggcgggttcatgactcactgtgggtggaactccttgctagaatcagtgatagctggggtaccaatggtggcgtggccgctctatgcagagcagcatctgaacaggagtgttctagtgaatgacatgaaaatggcgattgatgtggagcagagaaaggaagatgggttcgtgaccggggatgaaatggagagaagagttacggagttgatggagtcggaaaatggaagagcgctcaaagagaggagtttgaaaattggggcgatggctttgggtgttctgggagatcttggttcctcaatatttgctctgcttttgatgatagattgtttgggttattgcttcatgatgatggatgatttggacaaaccaaaaacacatttcagattctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

139

Amino Acids

15.71

Weight (kDa)

5.2

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 88
AccBSI CCGCTC 1 cut(s) 109
AciI CCGC 2 cut(s) 33, 107
AcoI YGGCCR 1 cut(s) 104
AfaI GTAC 1 cut(s) 90
AfeI AGCGCT 1 cut(s) 261
AgsI TTSAA 1 cut(s) 280
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AlwNI CAGNNNCTG 2 cut(s) 127, 417
Aor51HI AGCGCT 1 cut(s) 261
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 121
Asp718I GGTACC 1 cut(s) 88
AspLEI GCGC 1 cut(s) 262
AsuC2I CCSGG 1 cut(s) 205
BanI GGYRCC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 133
BccI CCATC 4 cut(s) 185, 232, 286, 373
BcnI CCSGG 1 cut(s) 205
BfaI CTAG 2 cut(s) 68, 143
BfoI RGCGCY 1 cut(s) 263
BglII AGATCT 1 cut(s) 313
BisI GCNGC 2 cut(s) 107, 122
BlsI GCNGC 2 cut(s) 108, 123
Bme1390I CCNGG 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 90, 322
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 2 cut(s) 214, 388
BseRI GAGGAG 1 cut(s) 286
BseXI GCAGC 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 83
BshFI GGCC 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 204
BsnI GGCC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 313
BspACI CCGC 2 cut(s) 33, 107
BspANI GGCC 1 cut(s) 106
BspHI TCATGA 2 cut(s) 39, 372
BspLI GGNNCC 2 cut(s) 90, 322
BspQI GCTCTTC 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 88
BsrBI CCGCTC 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 2 cut(s) 217, 250
BstF5I GGATG 2 cut(s) 214, 388
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 1 cut(s) 316
BstMBI GATC 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 1 cut(s) 106
BtgZI GCGATG 1 cut(s) 305
BtsCI GGATG 2 cut(s) 214, 388
BtsIMutI CAGTG 2 cut(s) 46, 81
CaiI CAGNNNCTG 2 cut(s) 127, 417
CciI TCATGA 2 cut(s) 39, 372
CfoI GCGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 89
CviAII CATG 3 cut(s) 40, 154, 373
CviJI RGCY 3 cut(s) 83, 106, 296
CviKI_1 RGCY 3 cut(s) 83, 106, 296
CviQI GTAC 1 cut(s) 89
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 104
Eam1104I CTCTTC 2 cut(s) 217, 250
EarI CTCTTC 2 cut(s) 217, 250
Eco47III AGCGCT 1 cut(s) 261
FaeI CATG 3 cut(s) 43, 157, 376
FaiI YATR 4 cut(s) 41, 114, 155, 374
FatI CATG 3 cut(s) 39, 153, 372
FauI CCCGC 1 cut(s) 26
Fnu4HI GCNGC 2 cut(s) 107, 122
FokI GGATG 2 cut(s) 221, 395
Fsp4HI GCNGC 2 cut(s) 107, 122
FspBI CTAG 2 cut(s) 68, 143
GlaI GCGC 1 cut(s) 261
GluI GCNGC 2 cut(s) 107, 122
GsaI CCCAGC 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 1 cut(s) 106
HapII CCGG 1 cut(s) 204
HhaI GCGC 1 cut(s) 262
Hin1II CATG 3 cut(s) 43, 157, 376
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 4 cut(s) 43, 71, 242, 414
HpaII CCGG 1 cut(s) 204
Hpy188I TCNGA 4 cut(s) 129, 247, 413, 419
Hpy188III TCNNGA 3 cut(s) 40, 199, 373
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 116
Hsp92II CATG 3 cut(s) 43, 157, 376
HspAI GCGC 1 cut(s) 260
KpnI GGTACC 1 cut(s) 92
Kzo9I GATC 1 cut(s) 313
LguI GCTCTTC 1 cut(s) 250
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 4 cut(s) 69, 118, 217, 293
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 133
MaeI CTAG 2 cut(s) 68, 143
MaeIII GTNAC 2 cut(s) 199, 226
MalI GATC 1 cut(s) 315
MbiI CCGCTC 1 cut(s) 109
MboI GATC 1 cut(s) 313
MboII GAAGA 4 cut(s) 28, 200, 234, 267
MflI RGATCY 1 cut(s) 313
MluCI AATT 1 cut(s) 282
MlyI GAGTC 2 cut(s) 37, 251
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 2 cut(s) 264, 334
MslI CAYNNNNRTG 2 cut(s) 158, 377
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 205
NciI CCSGG 1 cut(s) 205
NdeII GATC 1 cut(s) 313
NlaIII CATG 3 cut(s) 43, 157, 376
NlaIV GGNNCC 2 cut(s) 90, 322
NmuCI GTSAC 1 cut(s) 199
PagI TCATGA 2 cut(s) 39, 372
PciSI GCTCTTC 1 cut(s) 250
PfeI GAWTC 2 cut(s) 71, 414
PkrI GCNGC 2 cut(s) 108, 123
PleI GAGTC 2 cut(s) 37, 250
PpsI GAGTC 2 cut(s) 37, 250
PspFI CCCAGC 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 90, 322
PstNI CAGNNNCTG 2 cut(s) 127, 417
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 2 cut(s) 158, 377
SapI GCTCTTC 1 cut(s) 250
SatI GCNGC 2 cut(s) 107, 122
Sau3AI GATC 1 cut(s) 313
SchI GAGTC 2 cut(s) 37, 251
ScrFI CCNGG 1 cut(s) 205
SetI ASST 1 cut(s) 85
SfaNI GCATC 1 cut(s) 133
SmiMI CAYNNNNRTG 2 cut(s) 158, 377
Sse9I AATT 1 cut(s) 282
SsiI CCGC 2 cut(s) 33, 107
SspI AATATT 1 cut(s) 330
SspMI CTAG 2 cut(s) 68, 143
StyD4I CCNGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 50
TasI AATT 1 cut(s) 282
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 2 cut(s) 71, 414
TscAI CASTG 2 cut(s) 53, 81
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 4 cut(s) 28, 170, 225, 361
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 2 cut(s) 53, 81
XcmI CCANNNNNNNNNTGG 1 cut(s) 99
XspI CTAG 2 cut(s) 68, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.