Rh3AG190800

Anthocyanidin 5,3-O-glucosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0016962
Physical Location & Seq
Forward (+)
18230545 .. 18233786
3242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG190800.1

Sequence Viewer

Length: 315 bp
ATGGCGATTGATGTGGAGCAGAGAGAGGAAGATGGGTTCGTGACCCGGGATGAAGTGGAGATAAGAGTTACAGAGTTGATGGAGTCGGAAAATGGAAGAGAGCTCAAAGAGAGGAGTTTGAAAATTGGGGAGATGGCTTTGGGTGCTCTAGGAGATCTTGGTTCCTCAATATCTGCTCTGCTTTTGATGATAGATTGTTTGGAGCAGACATCAACACTACCATCAGATTTCATGGTGGTTTTCGACAACATCCTTTCCTTCGTCTGTAGTTTCACGATGGCCAACACCACCACTTTTCAAGTTTCGGGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

104

Amino Acids

11.49

Weight (kDa)

4.08

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 279
AgsI TTSAA 2 cut(s) 121, 299
AloI GAACNNNNNNTCC 2 cut(s) 20, 52
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw21I GWGCWC 2 cut(s) 105, 148
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 1 cut(s) 279
AsuC2I CCSGG 2 cut(s) 46, 47
AvaI CYCGRG 1 cut(s) 45
BalI TGGCCA 1 cut(s) 281
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 2 cut(s) 105, 148
BccI CCATC 5 cut(s) 26, 73, 127, 229, 271
BcnI CCSGG 2 cut(s) 46, 47
BfaI CTAG 2 cut(s) 149, 313
BfmI CTRYAG 1 cut(s) 265
BglII AGATCT 1 cut(s) 154
Bme1390I CCNGG 2 cut(s) 46, 47
BmeT110I CYCGRG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 46, 47
BpuMI CCSGG 2 cut(s) 46, 47
BsaJI CCNNGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 55, 249
BseRI GAGGAG 1 cut(s) 127
BshFI GGCC 1 cut(s) 281
BsiHKAI GWGCWC 2 cut(s) 105, 148
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 1 cut(s) 46
BsnI GGCC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 105, 148
Bsp143I GATC 1 cut(s) 154
BspANI GGCC 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 91
BstF5I GGATG 2 cut(s) 55, 249
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstSCI CCNGG 2 cut(s) 44, 45
BstSFI CTRYAG 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 2 cut(s) 55, 249
Cfr9I CCCGGG 1 cut(s) 45
CviAII CATG 1 cut(s) 232
CviJI RGCY 3 cut(s) 103, 137, 281
CviKI_1 RGCY 3 cut(s) 103, 137, 281
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 1 cut(s) 235
FaiI YATR 1 cut(s) 233
FatI CATG 1 cut(s) 231
FokI GGATG 2 cut(s) 62, 236
FriOI GRGCYC 1 cut(s) 105
FspBI CTAG 2 cut(s) 149, 313
HaeIII GGCC 1 cut(s) 281
HapII CCGG 1 cut(s) 46
Hin1II CATG 1 cut(s) 235
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 88, 226
Hpy188III TCNNGA 2 cut(s) 40, 274
HpyAV CCTTC 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
Hsp92II CATG 1 cut(s) 235
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 2 cut(s) 16, 202
LpnPI CCDG 1 cut(s) 59
MaeI CTAG 2 cut(s) 149, 313
MaeIII GTNAC 3 cut(s) 40, 67, 308
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 2 cut(s) 41, 108
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 105, 148
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 1 cut(s) 123
MluNI TGGCCA 1 cut(s) 281
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 3 cut(s) 19, 105, 175
Mox20I TGGCCA 1 cut(s) 281
MscI TGGCCA 1 cut(s) 281
Msp20I TGGCCA 1 cut(s) 281
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 2 cut(s) 46, 47
MwoI GCNNNNNNNGC 1 cut(s) 143
NciI CCSGG 2 cut(s) 46, 47
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 40
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 154
SacI GAGCTC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 154
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 46, 47
SduI GDGCHC 2 cut(s) 105, 148
SetI ASST 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 265
SgeI CNNG 9 cut(s) 52, 57, 58, 59, 161, 170, 244, 286, 311
SmaI CCCGGG 1 cut(s) 47
Sse9I AATT 1 cut(s) 123
SspMI CTAG 2 cut(s) 149, 313
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 44, 45
TaqI TCGA 1 cut(s) 243
TasI AATT 1 cut(s) 123
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 66, 220
TspMI CCCGGG 1 cut(s) 45
XmaI CCCGGG 1 cut(s) 45
XspI CTAG 2 cut(s) 149, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.