Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0016962

Physical Location & Seq

Genomic Coordinates Forward (+)

19812378 .. 19815993

Gene Structure 3616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG220000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCGATTGATGTGGAGCAGAGAGAGGAAGATGGGTTCGTGACCCGGGATGAAGTGGAGATAAGAGTTACAGAGTTGATGGAGTCGGAAAATGGAAGAGAGCTCAAAGAGAGGAGTTTGAAAATTGGGGAGATGGCTTTGGGTGCTCTAGGAGATCTTGGTTCCTCAATATCTGCTCTGCTTTTGATGATAGATTGTTTGGTCCGTTGTTCTGACGGCTCGGCATCCTTTGCAAAGACGAAGGTCGGGCTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

85

Amino Acids

9.26

Weight (kDa)

4.6

Isoelectric Point (pI)

28.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016962)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g18950
rosa_chinensis	RchiOBHm_Chr3g0474321
rosa_multiflora	Rmu_co8376729.1_g000001 Rmu_sc0000778.1_g000004
rosa_rugosa	Rorug02G0036400
rosa_samantha	Rh3AG190800 Rh3BG220000 Rh3CG215200 Rh3DG215700 Rh7AG398400 Rh7BG379700 Rh7BG379900 Rh7CG416500 Rh7CG416600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	121
AloI	GAACNNNNNNTCC	2 cut(s)	20, 52
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw21I	GWGCWC	2 cut(s)	105, 148
Ama87I	CYCGRG	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	202
AsuC2I	CCSGG	2 cut(s)	46, 47
AvaI	CYCGRG	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	202
BanII	GRGCYC	2 cut(s)	105, 252
Bbv12I	GWGCWC	2 cut(s)	105, 148
BccI	CCATC	3 cut(s)	26, 73, 127
BceAI	ACGGC	1 cut(s)	232
BcnI	CCSGG	2 cut(s)	46, 47
BfaI	CTAG	1 cut(s)	149
BglII	AGATCT	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	46, 47
Bme18I	GGWCC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	2 cut(s)	46, 47
BmsI	GCATC	1 cut(s)	233
BoxI	GACNNNNGTC	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	46, 47
BsaJI	CCNNGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	55, 224
BseRI	GAGGAG	1 cut(s)	127
BsiHKAI	GWGCWC	2 cut(s)	105, 148
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	45
Bsp1286I	GDGCHC	3 cut(s)	105, 148, 252
Bsp143I	GATC	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	91
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	55, 224
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 230
BstPAI	GACNNNNGTC	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	44, 45
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	55, 224
Cfr13I	GGNCC	1 cut(s)	202
Cfr9I	CCCGGG	1 cut(s)	45
CviJI	RGCY	4 cut(s)	103, 137, 219, 250
CviKI_1	RGCY	4 cut(s)	103, 137, 219, 250
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	105, 252
Eco47I	GGWCC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	2 cut(s)	105, 252
FokI	GGATG	2 cut(s)	62, 211
FriOI	GRGCYC	2 cut(s)	105, 252
FspBI	CTAG	1 cut(s)	149
HapII	CCGG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	88, 214
Hpy188III	TCNNGA	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	235
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 230
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	1 cut(s)	59
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	40, 67
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	41, 108
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	3 cut(s)	105, 148, 252
MluCI	AATT	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	3 cut(s)	19, 105, 175
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	2 cut(s)	46, 47
MwoI	GCNNNNNNNGC	2 cut(s)	143, 230
NciI	CCSGG	2 cut(s)	46, 47
NdeII	GATC	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	163
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	40
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PshAI	GACNNNNGTC	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	46, 47
SduI	GDGCHC	3 cut(s)	105, 148, 252
SetI	ASST	2 cut(s)	105, 246
SfaNI	GCATC	1 cut(s)	233
SgeI	CNNG	7 cut(s)	52, 57, 58, 59, 161, 170, 232
SinI	GGWCC	1 cut(s)	202
SmaI	CCCGGG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	123
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	44, 45
TasI	AATT	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	194
TspMI	CCCGGG	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	202
XmaI	CCCGGG	1 cut(s)	45
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.