Rh7BG379900

Anthocyanidin 5,3-O-glucosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016962
Physical Location & Seq
Reverse (-)
40978778 .. 40979548
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG379900.1

Sequence Viewer

Length: 414 bp
ATGGCTATTGATGTGGAGCAGAGAGAGGAAGATGGGTTCCTGACTGGGGATGAAGTGGAGAGAAGAGTTAGGGAGTTGATGGAGTCGGAAAAGGGAAGAGAGCTCAGAGAGAGGAGTTTGAAAATTGGGGAGATGGCTTTGGGTGCTCTGGGAGAGCTTGGTTCCTCCAGAAGAGCTCTGGCCAACTTTATTGCTGGGAAAATTAAGTTTAGTTGGAACTGGGCGACGCCATCGGATGAGAATTTCAGTGGCAGTGATGATTCTGATGATGGGTATAAGCTTCCATCAGCAGTGAAAGGGATGCATCAAGTAGAGCTATCATGTGAGGCACAAACACAACTAGTTTCAATTCAAGAGCAAAACAGAGCCTTCACAGTTTGCCACTATTTTCCATCAACAACTTTCCAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

137

Amino Acids

15.43

Weight (kDa)

4.9

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 1 cut(s) 241
AcyI GRCGYC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 3 cut(s) 121, 348, 353
AhlI ACTAGT 1 cut(s) 340
AloI GAACNNNNNNTCC 2 cut(s) 20, 52
AluBI AGCT 5 cut(s) 103, 157, 176, 280, 316
AluI AGCT 5 cut(s) 103, 157, 176, 280, 316
Alw21I GWGCWC 3 cut(s) 105, 148, 178
AoxI GGCC 1 cut(s) 180
ApoI RAATTY 1 cut(s) 241
BalI TGGCCA 1 cut(s) 182
BanII GRGCYC 2 cut(s) 105, 178
Bbv12I GWGCWC 3 cut(s) 105, 148, 178
BccI CCATC 7 cut(s) 26, 73, 127, 238, 263, 292, 400
BcuI ACTAGT 1 cut(s) 340
BfaI CTAG 2 cut(s) 341, 412
BmiI GGNNCC 2 cut(s) 38, 163
BmrI ACTGGG 2 cut(s) 54, 229
BmsI GCATC 2 cut(s) 291, 313
BmuI ACTGGG 2 cut(s) 54, 229
BpmI CTGGAG 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 2 cut(s) 49, 224
BseGI GGATG 3 cut(s) 55, 241, 306
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 2 cut(s) 49, 224
BseRI GAGGAG 1 cut(s) 127
BseYI CCCAGC 1 cut(s) 194
BshFI GGCC 1 cut(s) 182
BsiHKAI GWGCWC 3 cut(s) 105, 148, 178
BslI CCNNNNNNNGG 1 cut(s) 46
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 3 cut(s) 105, 148, 178
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 38, 163
BspQI GCTCTTC 1 cut(s) 166
BsrI ACTGG 2 cut(s) 49, 224
BssNI GRCGYC 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 3 cut(s) 58, 91, 166
BstACI GRCGYC 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 3 cut(s) 55, 241, 306
BstMWI GCNNNNNNNGC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 3 cut(s) 55, 241, 306
BtsI GCAGTG 2 cut(s) 259, 297
BtsIMutI CAGTG 3 cut(s) 253, 259, 297
CseI GACGC 1 cut(s) 235
CviAII CATG 1 cut(s) 321
CviJI RGCY 9 cut(s) 5, 103, 137, 157, 176, 182, 280, 316, 368
CviKI_1 RGCY 9 cut(s) 5, 103, 137, 157, 176, 182, 280, 316, 368
DdeI CTNAG 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 3 cut(s) 58, 91, 166
EarI CTCTTC 3 cut(s) 58, 91, 166
Ecl136II GAGCTC 2 cut(s) 103, 176
Eco24I GRGCYC 2 cut(s) 105, 178
Eco53kI GAGCTC 2 cut(s) 103, 176
EcoICRI GAGCTC 2 cut(s) 103, 176
EcoT22I ATGCAT 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 105, 178
FaeI CATG 1 cut(s) 324
FaiI YATR 2 cut(s) 276, 322
FatI CATG 1 cut(s) 320
FokI GGATG 3 cut(s) 62, 248, 313
FriOI GRGCYC 2 cut(s) 105, 178
FspBI CTAG 2 cut(s) 341, 412
GsaI CCCAGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 1 cut(s) 182
HgaI GACGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 1 cut(s) 324
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 2 cut(s) 83, 260
Hpy188I TCNGA 4 cut(s) 88, 107, 235, 265
Hpy188III TCNNGA 3 cut(s) 40, 168, 353
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4V TGCA 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 104
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 1 cut(s) 324
LguI GCTCTTC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 7 cut(s) 30, 53, 134, 164, 180, 181, 205
LweI GCATC 2 cut(s) 291, 313
MaeI CTAG 2 cut(s) 341, 412
MboII GAAGA 4 cut(s) 41, 75, 108, 183
MhlI GDGCHC 3 cut(s) 105, 148, 178
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 4 cut(s) 123, 201, 241, 348
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 2 cut(s) 66, 194
MnlI CCTC 4 cut(s) 19, 105, 175, 319
Mox20I TGGCCA 1 cut(s) 182
Mph1103I ATGCAT 1 cut(s) 306
MscI TGGCCA 1 cut(s) 182
MseI TTAA 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 143
NlaIII CATG 1 cut(s) 324
NlaIV GGNNCC 2 cut(s) 38, 163
NsiI ATGCAT 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 260
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp124BI GAGCTC 2 cut(s) 105, 178
PspFI CCCAGC 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 38, 163
SacI GAGCTC 2 cut(s) 105, 178
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 204
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 3 cut(s) 105, 148, 178
SetI ASST 5 cut(s) 105, 159, 178, 282, 318
SfaNI GCATC 2 cut(s) 291, 313
SpeI ACTAGT 1 cut(s) 340
Sse9I AATT 4 cut(s) 123, 201, 241, 348
SspMI CTAG 2 cut(s) 341, 412
SstI GAGCTC 2 cut(s) 105, 178
TaaI ACNGT 1 cut(s) 376
TasI AATT 4 cut(s) 123, 201, 241, 348
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 3 cut(s) 253, 259, 297
TspDTI ATGAA 1 cut(s) 66
TspRI CASTG 3 cut(s) 253, 259, 297
XapI RAATTY 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XspI CTAG 2 cut(s) 341, 412
Zsp2I ATGCAT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.