RchiOBHm_Chr3g0475351

NADH dehydrogenase ubiquinone iron-sulfur protein 7

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
21169678 .. 21169866
189 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 189 bp
ATGATGAACTGGGCCCAGCGCGGCTTCATCTGGCCCATGACCTTCGGCCTCCCTTGCTGCGCTATCGAGATGATGCATATCGAAGCTTCCCGCTACGATTTGGACCAATTTGGAATCATTTTCCAGCCCAGCCCATGCCAGTCTGATTGCATGGTCGTCGCCGGTACTCTCACCAATAAGATTGCATGA

Protein Analysis

62

Amino Acids

7.02

Weight (kDa)

4.83

Isoelectric Point (pI)

61.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013207)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 21
AciI CCGC 2 cut(s) 21, 91
AfaI GTAC 1 cut(s) 166
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
AoxI GGCC 3 cut(s) 12, 32, 46
ApaI GGGCCC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 57
AspLEI GCGC 2 cut(s) 21, 62
AspS9I GGNCC 4 cut(s) 12, 13, 33, 103
AsuHPI GGTGA 1 cut(s) 163
AvaII GGWCC 1 cut(s) 103
BaeGI GKGCMC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 44
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BisI GCNGC 2 cut(s) 22, 58
BlsI GCNGC 2 cut(s) 23, 59
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 4 cut(s) 12, 13, 33, 103
BmiI GGNNCC 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 63
BmuI ACTGGG 1 cut(s) 19
BsaBI GATNNNNATC 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 14, 139
Bse8I GATNNNNATC 1 cut(s) 77
BseJI GATNNNNATC 1 cut(s) 77
BseNI ACTGG 2 cut(s) 14, 139
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 1 cut(s) 44
BseYI CCCAGC 2 cut(s) 15, 128
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 3 cut(s) 14, 34, 48
BsiSI CCGG 1 cut(s) 162
BsnI GGCC 3 cut(s) 14, 34, 48
Bsp120I GGGCCC 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 16
BspACI CCGC 2 cut(s) 21, 91
BspANI GGCC 3 cut(s) 14, 34, 48
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 14
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 2 cut(s) 14, 139
BssAI RCCGGY 1 cut(s) 161
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 2 cut(s) 21, 62
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 16
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 44
BsuRI GGCC 3 cut(s) 14, 34, 48
CfoI GCGC 2 cut(s) 21, 62
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 4 cut(s) 12, 13, 33, 103
Csp6I GTAC 1 cut(s) 165
CviAII CATG 4 cut(s) 37, 135, 151, 186
CviJI RGCY 7 cut(s) 14, 24, 34, 48, 86, 127, 132
CviKI_1 RGCY 7 cut(s) 14, 24, 34, 48, 86, 127, 132
CviQI GTAC 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 16
FaeI CATG 4 cut(s) 40, 138, 154, 189
FaiI YATR 5 cut(s) 38, 78, 136, 152, 187
FatI CATG 4 cut(s) 36, 134, 150, 185
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 22, 58
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 2 cut(s) 22, 58
GlaI GCGC 2 cut(s) 20, 61
GluI GCNGC 2 cut(s) 22, 58
GsaI CCCAGC 2 cut(s) 19, 132
HaeIII GGCC 3 cut(s) 14, 34, 48
HapII CCGG 1 cut(s) 162
HhaI GCGC 2 cut(s) 21, 62
Hin1II CATG 4 cut(s) 40, 138, 154, 189
Hin6I GCGC 2 cut(s) 19, 60
HinP1I GCGC 2 cut(s) 19, 60
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 1 cut(s) 114
HpaII CCGG 1 cut(s) 162
HphI GGTGA 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 52
HpyCH4V TGCA 3 cut(s) 76, 150, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
Hsp92II CATG 4 cut(s) 40, 138, 154, 189
HspAI GCGC 2 cut(s) 19, 60
LpnPI CCDG 6 cut(s) 16, 29, 137, 142, 152, 175
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 1 cut(s) 107
MnlI CCTC 1 cut(s) 59
Mph1103I ATGCAT 1 cut(s) 78
MspI CCGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 54
NlaIII CATG 4 cut(s) 40, 138, 154, 189
NlaIV GGNNCC 1 cut(s) 14
NsiI ATGCAT 1 cut(s) 78
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 2 cut(s) 23, 59
PspFI CCCAGC 2 cut(s) 15, 128
PspN4I GGNNCC 1 cut(s) 14
PspOMI GGGCCC 1 cut(s) 12
PspPI GGNCC 4 cut(s) 12, 13, 33, 103
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SatI GCNGC 2 cut(s) 22, 58
Sau96I GGNCC 4 cut(s) 12, 13, 33, 103
SduI GDGCHC 1 cut(s) 16
SetI ASST 2 cut(s) 44, 88
SfaNI GCATC 1 cut(s) 63
SinI GGWCC 1 cut(s) 103
Sse9I AATT 1 cut(s) 107
SsiI CCGC 2 cut(s) 21, 91
TaqI TCGA 2 cut(s) 66, 81
TasI AATT 1 cut(s) 107
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 1 cut(s) 114
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 2 cut(s) 16, 20
VpaK11BI GGWCC 1 cut(s) 103
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.