Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020364

Physical Location & Seq

Genomic Coordinates Reverse (-)

35162573 .. 35163123

Gene Structure 551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTGGAGCGGGAAAGGTGAACGTCGCGTTCTGTTACTATGCGGGGACTACATGGAAGACCACGAGGCCATGGTCCCCTTTCAAACACTGCAGGCCTATGGAGTCACTATTGACGCCGTCTGTCCCGGCAAGAAAGTTGGTGACTACTGCCGCACCGCTATTCATCAACACACTTCTGCCCACCAGACTCATCCGGAATCACGTGGTCAGAACTTTGCTCTGAATGCAACGTTTGATGACATTGAATATAGCAACTATGATGGAATAATAATCCCCGGAGGACGATCTCCTGAGTATCTTGCTATGGATGCATTGGTTTTACAATTGGTCAACAAGTTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0032787 GO:0042180 GO:0042182 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0046185 GO:0046394 GO:0051596 GO:0061727 GO:0071704 GO:0072330 GO:1901575 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00620 ko01120 map00620 map01120

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

114

Amino Acids

12.71

Weight (kDa)

5.37

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	8 - 113	4.1e-18	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020364)

Species	Orthologous Gene IDs
malus_domestica	MD09G1281700.v1.1
rosa_chinensis	RchiOBHm_Chr3g0487841
rosa_roxburghii	Rroxscaffold_3G00252290 Rroxscaffold_6G00394410
rosa_samantha	Rh3BG322100 Rh3CG320400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	9
AccII	CGCG	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	4 cut(s)	9, 42, 151, 156
AclI	AACGTT	1 cut(s)	230
AcvI	CACGTG	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	83, 245
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	2 cut(s)	66, 93
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	2 cut(s)	126, 276
AsuHPI	GGTGA	2 cut(s)	29, 152
AvaII	GGWCC	1 cut(s)	73
BauI	CACGAG	1 cut(s)	62
BbrPI	CACGTG	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	63
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	101
BcnI	CCSGG	2 cut(s)	126, 276
BfaI	CTAG	1 cut(s)	343
BfmI	CTRYAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
Bme1390I	CCNGG	2 cut(s)	126, 276
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	126, 276
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	63
BpuMI	CCSGG	2 cut(s)	126, 276
BsaAI	YACGTR	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	69, 274
BsaWI	WCCGGW	1 cut(s)	193
BseAI	TCCGGA	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	69, 274
BseGI	GGATG	2 cut(s)	190, 313
BseMII	CTCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	68, 95
BsiSI	CCGG	3 cut(s)	126, 194, 276
BslFI	GGGAC	3 cut(s)	59, 59, 108
BsmFI	GGGAC	3 cut(s)	59, 59, 108
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	68, 95
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	284
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	4 cut(s)	9, 42, 151, 156
BspANI	GGCC	2 cut(s)	68, 95
BspCNI	CTCAG	1 cut(s)	283
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	93
BsrBI	CCGCTC	1 cut(s)	9
BssECI	CCNNGG	2 cut(s)	69, 274
BssMI	GATC	1 cut(s)	284
BssNI	GRCGYC	1 cut(s)	114
BssSI	CACGAG	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	190, 313
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	284
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 308
BstSCI	CCNGG	2 cut(s)	124, 274
BstSFI	CTRYAG	1 cut(s)	89
BstUI	CGCG	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	68, 95
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	190, 313
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	73
CseI	GACGC	1 cut(s)	122
CviAII	CATG	2 cut(s)	52, 70
CviJI	RGCY	2 cut(s)	68, 95
CviKI_1	RGCY	2 cut(s)	68, 95
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	69
Eco147I	AGGCCT	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	55, 73
FaiI	YATR	7 cut(s)	40, 53, 71, 99, 249, 258, 305
FaqI	GGGAC	3 cut(s)	59, 59, 108
FatI	CATG	2 cut(s)	51, 69
FauI	CCCGC	2 cut(s)	2, 35
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	2 cut(s)	177, 320
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	1 cut(s)	343
GluI	GCNGC	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	68, 95
HapII	CCGG	3 cut(s)	126, 194, 276
HgaI	GACGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	55, 73
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	3 cut(s)	102, 187, 197
HpaII	CCGG	3 cut(s)	126, 194, 276
HphI	GGTGA	2 cut(s)	29, 152
Hpy166II	GTNNAC	2 cut(s)	20, 331
Hpy188I	TCNGA	2 cut(s)	210, 222
Hpy188III	TCNNGA	2 cut(s)	194, 290
Hpy8I	GTNNAC	2 cut(s)	20, 331
Hpy99I	CGWCG	1 cut(s)	27
HpyCH4IV	ACGT	3 cut(s)	22, 202, 230
HpyCH4V	TGCA	3 cut(s)	91, 227, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 308
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	3 cut(s)	22, 202, 230
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	55, 73
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	6
LpnPI	CCDG	6 cut(s)	77, 139, 197, 207, 289, 303
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	343
MaeII	ACGT	3 cut(s)	22, 202, 230
MaeIII	GTNAC	3 cut(s)	33, 103, 140
MalI	GATC	1 cut(s)	286
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	1 cut(s)	284
MboII	GAAGA	1 cut(s)	68
MfeI	CAATTG	1 cut(s)	323
MluCI	AATT	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	111, 181
MnlI	CCTC	2 cut(s)	58, 272
Mph1103I	ATGCAT	1 cut(s)	313
MroI	TCCGGA	1 cut(s)	193
MspI	CCGG	3 cut(s)	126, 194, 276
MspR9I	CCNGG	2 cut(s)	126, 276
MunI	CAATTG	1 cut(s)	323
Mva1269I	GAATGC	1 cut(s)	229
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	224, 308
NciI	CCSGG	2 cut(s)	126, 276
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	1 cut(s)	284
NlaIII	CATG	2 cut(s)	55, 73
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	2 cut(s)	103, 140
NsiI	ATGCAT	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	95
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	197
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	152
PleI	GAGTC	2 cut(s)	110, 181
PmaCI	CACGTG	1 cut(s)	203
PmlI	CACGTG	1 cut(s)	203
PpsI	GAGTC	2 cut(s)	110, 181
Ppu21I	YACGTR	1 cut(s)	203
Psp1406I	AACGTT	1 cut(s)	230
PspCI	CACGTG	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	93
PsyI	GACNNNGTC	1 cut(s)	116
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	1 cut(s)	284
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	2 cut(s)	111, 181
ScrFI	CCNGG	2 cut(s)	126, 276
SetI	ASST	4 cut(s)	19, 25, 205, 233
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	73
Sse9I	AATT	1 cut(s)	323
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	4 cut(s)	9, 42, 151, 156
SspMI	CTAG	1 cut(s)	343
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	124, 274
StyI	CCWWGG	1 cut(s)	69
TaiI	ACGT	3 cut(s)	25, 205, 233
TasI	AATT	1 cut(s)	323
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	197
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	2 cut(s)	103, 140
Tsp45I	GTSAC	2 cut(s)	103, 140
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	93
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	73
XspI	CTAG	1 cut(s)	343
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.