RchiOBHm_Chr3g0488851

UTP-glucose-1-phosphate uridylyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
36547888 .. 36555395
7508 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1410 bp
ATGGCTGCCGCTGATACGATCTCCAAGCTCAAATCTGAGGTCGCCGCTCTCAGCCAGATCAGCGAGAATGAGAAGAACGGATTCATCAACCTCGTCTCTCGCTATCTCAGTGGAACGGAAGCGACGCATGTAGATTGGAGTAAGATCCAGACTCCTACTGAGGAGGTTGTGGTTCCTTATGACACCTTGGCGCCTACTCCCGAAGATCCTGCCGAAACCAAGAAGCTTTTGGACAAACTTGTTGTGCTAAAACTCAATGGAGGTCTCGGAACAACCATGGGTTGTACTGGTCCCAAGTCAGTCATTGAAGTTCGAAATGGGTTGACATTTCTGGACTTGATTGTCATCCAGATTGAGACTCTCAATAACAAATATGGGTGCAATGTTCCTCTGCTTTTAATGAACTCATTCAACACTCATGATGATACATTTAAGATTGTTGAGAGATACACCAAGTCAAATGTTCAGATTCATACTTTTAACCAGAGTCAGTATCCTCGTTTGGTTGTTGAAGATAATTCGCCACTTCCATCTAAAGGACAGACTGGCAAGGATGGATGGTATCCTCCTGGCCATGGTGATGTATTCCCATCCTTAAGTAACAGTGGCAAACTGGATATGTTATTGTCACAGGGCAAGGAGTATGTGTTTGTTTCTAACTCCGACAACTTGGGTGCTGTTGTGGACTTGAAAATTTTGAATCATTTGGTCCAGAAAAAGAACGAGTACTGCATGGAGGTCACACCGAAAACATTGGCTGATGTGAAGGGTGGCACTCTAATCTCTTATGAGGGAAGGACTCAGCTCCTGGAAATCGCTCAAGTCCCTGATCAACATGTCAATGAATTCAAGTCAATAGAGAAGTTCAAAATTTTCAACACAAACAATTTGTGGGTTAATTTGAACGCAATTAAACGTCTTGTGCAAGCTGATGCACTGAAGATGGAGATTATCCCAAACCCAAAGGAAGTGGATGGAATCAAAGTTATGCAGCTAGAAACTGCAGCGGGTGCGGCAATCAGGTTCTTTGATAATGCTATTGGTATCAATGTACCCCGATCTCGATTCCTCCCTGTGAAGGCAACTTCAGATTTGCTTCTTGTCCAGTCTGACCTCTATACCGTAGAAGATGGCTTTGTTATCCGTAACCCAGCAAGGAAAAATCCTGCAAATCCTTCTGTTGAACTGGGGCCTGAGTTTAAGAAGGTTGGCAATTTCTTGAGTCGGTTCAAGTCAATCCCCAGCATCATTGAGCTTGATAGCCTTAAGGTGTCTGGTGATGTGTGGTTTGGTGCTGGCATTGTTCTCAAGGGAAAAGTAACTATCACAGCAAAACCTGGGGTGAAGTTGGAAATTCCTGATAAAGCTGTGCTGGAGAACAAGGATATCAATGGTCCTGAGGATCTCTAA

Protein Analysis

469

Amino Acids

51.62

Weight (kDa)

5.99

Isoelectric Point (pI)

23.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGP PF01704 26 - 437 1.9e-183 UTP--glucose-1-phosphate uridylyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 190
AccBSI CCGCTC 1 cut(s) 47
AciI CCGC 4 cut(s) 9, 45, 1007, 1013
AclWI GGATC 2 cut(s) 139, 200
AcoI YGGCCR 1 cut(s) 571
AcsI RAATTY 4 cut(s) 693, 845, 870, 1353
AcuI CTGAAG 2 cut(s) 959, 1071
AcyI GRCGYC 1 cut(s) 191
AfaI GTAC 3 cut(s) 286, 728, 1053
AfiI CCNNNNNNNGG 3 cut(s) 536, 575, 1078
AflII CTTAAG 2 cut(s) 595, 1265
AflIII ACRYGT 1 cut(s) 835
AjnI CCWGG 3 cut(s) 568, 807, 1336
AluBI AGCT 7 cut(s) 28, 226, 805, 929, 994, 1255, 1367
AluI AGCT 7 cut(s) 28, 226, 805, 929, 994, 1255, 1367
Alw26I GTCTC 3 cut(s) 100, 269, 350
AlwI GGATC 2 cut(s) 139, 200
AlwNI CAGNNNCTG 1 cut(s) 808
AoxI GGCC 2 cut(s) 571, 1190
ApeKI GCWGC 3 cut(s) 5, 991, 1004
ApoI RAATTY 4 cut(s) 693, 845, 870, 1353
ArsI GACNNNNNNTTYG 2 cut(s) 24, 56
Asp700I GAANNNNTTC 2 cut(s) 80, 407
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 4 cut(s) 290, 709, 1190, 1394
AsuHPI GGTGA 3 cut(s) 590, 1289, 1354
AsuII TTCGAA 1 cut(s) 313
AvaII GGWCC 3 cut(s) 290, 709, 1394
AxyI CCTNAGG 1 cut(s) 1398
BalI TGGCCA 1 cut(s) 573
BanI GGYRCC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 1003, 1016
BccI CCATC 7 cut(s) 538, 548, 552, 598, 937, 968, 1124
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 3 cut(s) 570, 809, 1338
BciVI GTATCC 2 cut(s) 504, 573
BclI TGATCA 1 cut(s) 829
BcoDI GTCTC 3 cut(s) 100, 269, 350
BfaI CTAG 1 cut(s) 995
BfmI CTRYAG 1 cut(s) 1002
BfoI RGCGCY 1 cut(s) 194
BfrI CTTAAG 2 cut(s) 595, 1265
BfuI GTATCC 2 cut(s) 504, 573
BisI GCNGC 6 cut(s) 6, 9, 45, 992, 1005, 1014
BlsI GCNGC 6 cut(s) 7, 10, 46, 993, 1006, 1015
BmcAI AGTACT 1 cut(s) 728
Bme1390I CCNGG 3 cut(s) 570, 809, 1338
Bme18I GGWCC 3 cut(s) 290, 709, 1394
BmgT120I GGNCC 4 cut(s) 290, 709, 1190, 1394
BmiI GGNNCC 4 cut(s) 174, 192, 292, 1191
BmrFI CCNGG 3 cut(s) 570, 809, 1338
BmrI ACTGGG 1 cut(s) 1196
BmsI GCATC 2 cut(s) 922, 1254
BmuI ACTGGG 1 cut(s) 1196
BpmI CTGGAG 1 cut(s) 1394
Bpu14I TTCGAA 1 cut(s) 313
BpuEI CTTGAG 3 cut(s) 804, 1240, 1292
BsaBI GATNNNNATC 1 cut(s) 344
BsaHI GRCGYC 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 4 cut(s) 186, 276, 574, 1337
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bsc4I CCNNNNNNNGG 3 cut(s) 536, 575, 1078
Bse1I ACTGG 5 cut(s) 292, 550, 618, 1105, 1191
Bse21I CCTNAGG 1 cut(s) 1398
Bse3DI GCAATG 1 cut(s) 388
Bse8I GATNNNNATC 1 cut(s) 344
BseBI CCWGG 3 cut(s) 570, 809, 1338
BseDI CCNNGG 4 cut(s) 186, 276, 574, 1337
BseGI GGATG 5 cut(s) 345, 559, 563, 590, 979
BseJI GATNNNNATC 1 cut(s) 344
BseLI CCNNNNNNNGG 3 cut(s) 536, 575, 1078
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 7 cut(s) 27, 64, 121, 150, 815, 1185, 1389
BseNI ACTGG 5 cut(s) 292, 550, 618, 1105, 1191
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 2 cut(s) 1003, 1016
BseYI CCCAGC 2 cut(s) 1150, 1241
BshFI GGCC 2 cut(s) 573, 1192
BshNI GGYRCC 1 cut(s) 190
BslFI GGGAC 2 cut(s) 276, 809
BslI CCNNNNNNNGG 3 cut(s) 536, 575, 1078
BsmAI GTCTC 3 cut(s) 100, 269, 350
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 2 cut(s) 276, 809
BsnI GGCC 2 cut(s) 573, 1192
Bso31I GGTCTC 1 cut(s) 269
Bsp119I TTCGAA 1 cut(s) 313
Bsp143I GATC 7 cut(s) 18, 57, 144, 205, 829, 1058, 1402
Bsp19I CCATGG 2 cut(s) 276, 574
BspACI CCGC 4 cut(s) 9, 45, 1007, 1013
BspANI GGCC 2 cut(s) 573, 1192
BspCNI CTCAG 7 cut(s) 28, 63, 120, 151, 814, 1186, 1390
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 4 cut(s) 174, 192, 292, 1191
BspMAI CTGCAG 1 cut(s) 1006
BspPI GGATC 2 cut(s) 139, 200
BspT104I TTCGAA 1 cut(s) 313
BspT107I GGYRCC 1 cut(s) 190
BspTI CTTAAG 2 cut(s) 595, 1265
BspTNI GGTCTC 1 cut(s) 269
BsrBI CCGCTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 388
BsrI ACTGG 5 cut(s) 292, 550, 618, 1105, 1191
BssECI CCNNGG 4 cut(s) 186, 276, 574, 1337
BssMI GATC 7 cut(s) 18, 57, 144, 205, 829, 1058, 1402
BssNI GRCGYC 1 cut(s) 191
BssT1I CCWWGG 3 cut(s) 186, 276, 574
Bst2UI CCWGG 3 cut(s) 570, 809, 1338
Bst4CI ACNGT 2 cut(s) 605, 1123
BstACI GRCGYC 1 cut(s) 191
BstAFI CTTAAG 2 cut(s) 595, 1265
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstBI TTCGAA 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 927, 1297
BstDEI CTNAG 7 cut(s) 36, 50, 107, 159, 801, 1194, 1398
BstDSI CCRYGG 2 cut(s) 276, 574
BstF5I GGATG 5 cut(s) 345, 559, 563, 590, 979
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 7 cut(s) 21, 60, 147, 208, 832, 1061, 1405
BstMAI GTCTC 3 cut(s) 100, 269, 350
BstMBI GATC 7 cut(s) 18, 57, 144, 205, 829, 1058, 1402
BstMWI GCNNNNNNNGC 3 cut(s) 60, 1010, 1013
BstNI CCWGG 3 cut(s) 570, 809, 1338
BstNSI RCATGY 2 cut(s) 131, 839
BstSCI CCNGG 3 cut(s) 568, 807, 1336
BstSFI CTRYAG 1 cut(s) 1002
BstV1I GCAGC 2 cut(s) 1003, 1016
BstX2I RGATCY 3 cut(s) 144, 205, 1402
BstYI RGATCY 3 cut(s) 144, 205, 1402
Bsu36I CCTNAGG 1 cut(s) 1398
BsuI GTATCC 2 cut(s) 504, 573
BsuRI GGCC 2 cut(s) 573, 1192
BtgI CCRYGG 2 cut(s) 276, 574
BtsCI GGATG 5 cut(s) 345, 559, 563, 590, 979
BtsIMutI CAGTG 3 cut(s) 115, 610, 935
Cac8I GCNNGC 2 cut(s) 927, 1297
CaiI CAGNNNCTG 1 cut(s) 808
CciI TCATGA 1 cut(s) 418
CfoI GCGC 1 cut(s) 193
Cfr13I GGNCC 4 cut(s) 290, 709, 1190, 1394
CseI GACGC 1 cut(s) 133
Csp6I GTAC 3 cut(s) 285, 727, 1052
CspCI CAANNNNNGTGG 2 cut(s) 951, 986
CviAII CATG 6 cut(s) 128, 277, 419, 575, 733, 836
CviQI GTAC 3 cut(s) 285, 727, 1052
DdeI CTNAG 7 cut(s) 36, 50, 107, 159, 801, 1194, 1398
DinI GGCGCC 1 cut(s) 192
DpnI GATC 7 cut(s) 20, 59, 146, 207, 831, 1060, 1404
DpnII GATC 7 cut(s) 18, 57, 144, 205, 829, 1058, 1402
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 571
Eco130I CCWWGG 3 cut(s) 186, 276, 574
Eco31I GGTCTC 1 cut(s) 269
Eco32I GATATC 1 cut(s) 1387
Eco47I GGWCC 3 cut(s) 290, 709, 1394
Eco57I CTGAAG 2 cut(s) 959, 1071
Eco81I CCTNAGG 1 cut(s) 1398
EcoO109I RGGNCCY 1 cut(s) 1190
EcoRI GAATTC 1 cut(s) 845
EcoRII CCWGG 3 cut(s) 568, 807, 1336
EcoRV GATATC 1 cut(s) 1387
EcoT14I CCWWGG 3 cut(s) 186, 276, 574
EgeI GGCGCC 1 cut(s) 192
EheI GGCGCC 1 cut(s) 192
ErhI CCWWGG 3 cut(s) 186, 276, 574
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 6 cut(s) 131, 280, 422, 578, 736, 839
FaqI GGGAC 2 cut(s) 276, 809
FatI CATG 6 cut(s) 127, 276, 418, 574, 732, 835
FauI CCCGC 1 cut(s) 1000
FbaI TGATCA 1 cut(s) 829
Fnu4HI GCNGC 6 cut(s) 6, 9, 45, 992, 1005, 1014
FokI GGATG 5 cut(s) 332, 566, 570, 577, 986
Fsp4HI GCNGC 6 cut(s) 6, 9, 45, 992, 1005, 1014
FspBI CTAG 1 cut(s) 995
GlaI GCGC 1 cut(s) 192
GluI GCNGC 6 cut(s) 6, 9, 45, 992, 1005, 1014
GsaI CCCAGC 2 cut(s) 1154, 1245
GsuI CTGGAG 1 cut(s) 1394
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 2 cut(s) 573, 1192
HgaI GACGC 1 cut(s) 133
HhaI GCGC 1 cut(s) 193
Hin1I GRCGYC 1 cut(s) 191
Hin1II CATG 6 cut(s) 131, 280, 422, 578, 736, 839
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HindIII AAGCTT 1 cut(s) 224
HphI GGTGA 3 cut(s) 590, 1289, 1354
Hpy166II GTNNAC 2 cut(s) 324, 685
Hpy188I TCNGA 6 cut(s) 37, 269, 468, 664, 1090, 1111
Hpy8I GTNNAC 2 cut(s) 324, 685
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 5 cut(s) 760, 789, 1072, 1185, 1198
HpyCH4III ACNGT 2 cut(s) 605, 1123
HpyCH4IV ACGT 1 cut(s) 916
HpyCH4V TGCA 7 cut(s) 381, 732, 925, 935, 991, 1004, 1169
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 1010, 1013
HpyF3I CTNAG 7 cut(s) 36, 50, 107, 159, 801, 1194, 1398
HpySE526I ACGT 1 cut(s) 916
Hsp92I GRCGYC 1 cut(s) 191
Hsp92II CATG 6 cut(s) 131, 280, 422, 578, 736, 839
HspAI GCGC 1 cut(s) 191
KasI GGCGCC 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 829
Kzo9I GATC 7 cut(s) 18, 57, 144, 205, 829, 1058, 1402
LmnI GCTCC 1 cut(s) 810
Lsp1109I GCAGC 2 cut(s) 1003, 1016
LweI GCATC 2 cut(s) 922, 1254
MaeI CTAG 1 cut(s) 995
MaeII ACGT 1 cut(s) 916
MaeIII GTNAC 5 cut(s) 599, 627, 739, 1145, 1318
MalI GATC 7 cut(s) 20, 59, 146, 207, 831, 1060, 1404
MbiI CCGCTC 1 cut(s) 47
MboI GATC 7 cut(s) 18, 57, 144, 205, 829, 1058, 1402
MboII GAAGA 5 cut(s) 85, 215, 524, 952, 1139
MflI RGATCY 3 cut(s) 144, 205, 1402
MlsI TGGCCA 1 cut(s) 573
MluCI AATT 9 cut(s) 517, 693, 845, 870, 886, 898, 909, 1213, 1353
MluNI TGGCCA 1 cut(s) 573
Mly113I GGCGCC 1 cut(s) 191
MlyI GAGTC 5 cut(s) 145, 352, 496, 793, 1231
MmeI TCCRAC 2 cut(s) 687, 1329
Mox20I TGGCCA 1 cut(s) 573
MroXI GAANNNNTTC 2 cut(s) 80, 407
MscI TGGCCA 1 cut(s) 573
MseI TTAA 8 cut(s) 398, 432, 480, 596, 897, 912, 1200, 1266
MslI CAYNNNNRTG 2 cut(s) 579, 840
Msp20I TGGCCA 1 cut(s) 573
MspA1I CMGCKG 2 cut(s) 11, 1007
MspCI CTTAAG 2 cut(s) 595, 1265
MspR9I CCNGG 3 cut(s) 570, 809, 1338
MvaI CCWGG 3 cut(s) 570, 809, 1338
MwoI GCNNNNNNNGC 3 cut(s) 60, 1010, 1013
NarI GGCGCC 1 cut(s) 191
NcoI CCATGG 2 cut(s) 276, 574
NdeII GATC 7 cut(s) 18, 57, 144, 205, 829, 1058, 1402
NlaIII CATG 6 cut(s) 131, 280, 422, 578, 736, 839
NlaIV GGNNCC 4 cut(s) 174, 192, 292, 1191
NmuCI GTSAC 2 cut(s) 627, 739
NspI RCATGY 2 cut(s) 131, 839
NspV TTCGAA 1 cut(s) 313
PagI TCATGA 1 cut(s) 418
PciI ACATGT 1 cut(s) 835
PdmI GAANNNNTTC 2 cut(s) 80, 407
PfeI GAWTC 5 cut(s) 81, 469, 700, 978, 1065
PfoI TCCNGGA 1 cut(s) 807
PkrI GCNGC 6 cut(s) 7, 10, 46, 993, 1006, 1015
PleI GAGTC 5 cut(s) 145, 352, 495, 793, 1230
PluTI GGCGCC 1 cut(s) 194
PpsI GAGTC 5 cut(s) 145, 352, 495, 793, 1230
PscI ACATGT 1 cut(s) 835
Psp6I CCWGG 3 cut(s) 568, 807, 1336
PspFI CCCAGC 2 cut(s) 1150, 1241
PspGI CCWGG 3 cut(s) 568, 807, 1336
PspN4I GGNNCC 4 cut(s) 174, 192, 292, 1191
PspPI GGNCC 4 cut(s) 290, 709, 1190, 1394
PstI CTGCAG 1 cut(s) 1006
PstNI CAGNNNCTG 1 cut(s) 808
PsuI RGATCY 3 cut(s) 144, 205, 1402
RsaI GTAC 3 cut(s) 286, 728, 1053
RsaNI GTAC 3 cut(s) 285, 727, 1052
RseI CAYNNNNRTG 2 cut(s) 579, 840
SaqAI TTAA 8 cut(s) 398, 432, 480, 596, 897, 912, 1200, 1266
SatI GCNGC 6 cut(s) 6, 9, 45, 992, 1005, 1014
Sau3AI GATC 7 cut(s) 18, 57, 144, 205, 829, 1058, 1402
Sau96I GGNCC 4 cut(s) 290, 709, 1190, 1394
ScaI AGTACT 1 cut(s) 728
SchI GAGTC 5 cut(s) 145, 352, 496, 793, 1231
ScrFI CCNGG 3 cut(s) 570, 809, 1338
SfaNI GCATC 2 cut(s) 922, 1254
SfcI CTRYAG 1 cut(s) 1002
SfoI GGCGCC 1 cut(s) 192
SfuI TTCGAA 1 cut(s) 313
SinI GGWCC 3 cut(s) 290, 709, 1394
SmiMI CAYNNNNRTG 2 cut(s) 579, 840
SmlI CTYRAG 5 cut(s) 595, 819, 1219, 1265, 1307
SmoI CTYRAG 5 cut(s) 595, 819, 1219, 1265, 1307
Sse9I AATT 9 cut(s) 517, 693, 845, 870, 886, 898, 909, 1213, 1353
SsiI CCGC 4 cut(s) 9, 45, 1007, 1013
SspDI GGCGCC 1 cut(s) 190
SspMI CTAG 1 cut(s) 995
StyD4I CCNGG 3 cut(s) 568, 807, 1336
StyI CCWWGG 3 cut(s) 186, 276, 574
TaaI ACNGT 2 cut(s) 605, 1123
TaiI ACGT 1 cut(s) 919
TaqI TCGA 2 cut(s) 313, 1063
TasI AATT 9 cut(s) 517, 693, 845, 870, 886, 898, 909, 1213, 1353
TatI WGTACW 2 cut(s) 284, 726
TauI GCSGC 3 cut(s) 11, 47, 1016
TfiI GAWTC 5 cut(s) 81, 469, 700, 978, 1065
Tru1I TTAA 8 cut(s) 398, 432, 480, 596, 897, 912, 1200, 1266
Tru9I TTAA 8 cut(s) 398, 432, 480, 596, 897, 912, 1200, 1266
TscAI CASTG 3 cut(s) 115, 610, 942
TseFI GTSAC 2 cut(s) 627, 739
TseI GCWGC 3 cut(s) 5, 991, 1004
Tsp45I GTSAC 2 cut(s) 627, 739
TspDTI ATGAA 4 cut(s) 73, 416, 461, 858
TspGWI ACGGA 3 cut(s) 93, 131, 1133
TspRI CASTG 3 cut(s) 115, 610, 942
Vha464I CTTAAG 2 cut(s) 595, 1265
VpaK11BI GGWCC 3 cut(s) 290, 709, 1394
XapI RAATTY 4 cut(s) 693, 845, 870, 1353
XceI RCATGY 2 cut(s) 131, 839
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XmnI GAANNNNTTC 2 cut(s) 80, 407
XspI CTAG 1 cut(s) 995
ZrmI AGTACT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.