RchiOBHm_Chr3g0489021

Belongs to the isocitrate and isopropylmalate dehydrogenases family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
36730825 .. 36733605
2781 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 306 bp
ATGGAGTTCGAGAAGATCAAGGTCGCCAATCCCACCGTTGAGATGGACGGAGATGAGATGACTCGAGTTTTCTGGAAATCAATTAAGGATAAACTTATTTTCCCCTTTTTGGATCTGGACATCAAGTACTTTGACCTTGGTCTTCCTCATCGTGATGCCACTAATGATAAAGTTACTGTTGAAATGCAGAGGCAACTCTTAGAACCGATTCTTTGCAAGAACGTTCCTCGCCTTATCCCAGGCTGGACAAAGGCAATATGCATTGGAAGACATGTTTCGGTGATCAATATCAATCAATTGATTTAG
Functional Annotation

Protein Analysis

101

Amino Acids

11.75

Weight (kDa)

6.72

Isoelectric Point (pI)

17.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017877)

Species Orthologous Gene IDs
malus_domestica MD10G1219400.v1.1
pyrus_communis pycom10g18550
rosa_chinensis RchiOBHm_Chr3g0471031 RchiOBHm_Chr3g0489021 RchiOBHm_Chr3g0492451
rosa_multiflora Rmu_sc0019359.1_g000001
rosa_roxburghii Rroxscaffold_3G00234280
rosa_rugosa Rorug05G0306800
rosa_samantha Rh3BG190100 Rh3CG180000
rosa_wichuraiana Rw1G029100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 222
AclWI GGATC 1 cut(s) 120
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 109
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 238
AlwI GGATC 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 63
BbsI GAAGAC 2 cut(s) 134, 274
BccI CCATC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 240
BclI TGATCA 1 cut(s) 282
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 1 cut(s) 145
BoxI GACNNNNGTC 1 cut(s) 138
BpiI GAAGAC 2 cut(s) 134, 274
BsaBI GATNNNNATC 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 136, 238
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse8I GATNNNNATC 1 cut(s) 287
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 136, 238
BseJI GATNNNNATC 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 109
BsoBI CYCGRG 1 cut(s) 63
Bsp143I GATC 3 cut(s) 15, 112, 282
BspPI GGATC 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 136, 238
BssMI GATC 3 cut(s) 15, 112, 282
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 2 cut(s) 37, 178
BstDEI CTNAG 1 cut(s) 199
BstKTI GATC 3 cut(s) 18, 115, 285
BstMBI GATC 3 cut(s) 15, 112, 282
BstNI CCWGG 1 cut(s) 240
BstNSI RCATGY 1 cut(s) 275
BstPAI GACNNNNGTC 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 238
BstV2I GAAGAC 2 cut(s) 134, 274
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
Csp6I GTAC 1 cut(s) 127
CviAII CATG 1 cut(s) 272
CviJI RGCY 1 cut(s) 243
CviKI_1 RGCY 1 cut(s) 243
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 1 cut(s) 199
DpnI GATC 3 cut(s) 17, 114, 284
DpnII GATC 3 cut(s) 15, 112, 282
Eco130I CCWWGG 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 1 cut(s) 275
FaiI YATR 2 cut(s) 259, 273
FatI CATG 1 cut(s) 271
FbaI TGATCA 1 cut(s) 282
Hin1II CATG 1 cut(s) 275
HinfI GANTC 2 cut(s) 61, 208
HphI GGTGA 1 cut(s) 292
Hpy188III TCNNGA 4 cut(s) 10, 73, 116, 152
HpyCH4III ACNGT 2 cut(s) 37, 178
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 187, 216, 261
HpyF3I CTNAG 1 cut(s) 199
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 1 cut(s) 275
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 3 cut(s) 15, 112, 282
LpnPI CCDG 5 cut(s) 58, 101, 225, 229, 252
LweI GCATC 1 cut(s) 145
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 172
MalI GATC 3 cut(s) 17, 114, 284
MboI GATC 3 cut(s) 15, 112, 282
MboII GAAGA 3 cut(s) 25, 134, 279
MfeI CAATTG 1 cut(s) 296
MflI RGATCY 1 cut(s) 112
MluCI AATT 2 cut(s) 81, 296
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 3 cut(s) 156, 183, 237
Mph1103I ATGCAT 1 cut(s) 263
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 240
MunI CAATTG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 240
NdeII GATC 3 cut(s) 15, 112, 282
NlaIII CATG 1 cut(s) 275
NsiI ATGCAT 1 cut(s) 263
NspI RCATGY 1 cut(s) 275
PaeR7I CTCGAG 1 cut(s) 63
PciI ACATGT 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 208
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PscI ACATGT 1 cut(s) 271
PshAI GACNNNNGTC 1 cut(s) 138
Psp1406I AACGTT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspXI VCTCGAGB 1 cut(s) 63
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 3 cut(s) 15, 112, 282
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 240
SetI ASST 3 cut(s) 24, 138, 225
SfaNI GCATC 1 cut(s) 145
Sfr274I CTCGAG 1 cut(s) 63
SlaI CTCGAG 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 2 cut(s) 81, 296
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 37, 178
TaiI ACGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 9, 64
TasI AATT 2 cut(s) 81, 296
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 63
XceI RCATGY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 207
ZrmI AGTACT 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.