RchiOBHm_Chr3g0496501

Patellin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017430
Physical Location & Seq
Forward (+)
47406007 .. 47406433
427 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGTTCACGGTGCATTTACATGAAGCGCCTGCACTTTATAAAAAAAATTATGTCAGTGAGAGAAGGCACTTTTATAAAAGCACTGCCAAACAATCCCACTCATGCATGTCTGATGATGAATCAAAGCTTACATTATTGAATTGGATGTCAATAAATTGCAGAAGTGCACCATCATATGGGAACTCTGTAGTTGGGTGGGATGTGAGCTATGGAGCTGAATTTGTTCCTGTTCCTGACTCTATACTGATCATTCAAACAGCCACAAAGATGACTCCATCTGATGAACCATTAAAAGGGATTTCACAGTTTGTTGGGGCTTCAATAGGAACTTGGAATCTTAAAATCTCTGTCAAAGACACACTAAGTGATGGTCATCGTCACAATTCTCCTCCTCCGAGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

134

Amino Acids

14.91

Weight (kDa)

8.57

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOLD_PATL1_C PF25099 62 - 97 1.2e-06 Patellin-1-like, C-terminal GOLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 39, 75
AccB7I CCANNNNNTGG 1 cut(s) 176
AcsI RAATTY 1 cut(s) 218
AdeI CACNNNGTG 1 cut(s) 365
AfiI CCNNNNNNNGG 2 cut(s) 176, 293
AgsI TTSAA 3 cut(s) 139, 254, 321
AluBI AGCT 4 cut(s) 127, 207, 215, 401
AluI AGCT 4 cut(s) 127, 207, 215, 401
Alw21I GWGCWC 1 cut(s) 169
Alw44I GTGCAC 1 cut(s) 165
ApaLI GTGCAC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 169
BccI CCATC 3 cut(s) 178, 283, 362
BclI TGATCA 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 29
BsaBI GATNNNNATC 1 cut(s) 372
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 293
Bse8I GATNNNNATC 1 cut(s) 372
BseGI GGATG 2 cut(s) 150, 205
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 2 cut(s) 176, 293
BseRI GAGGAG 2 cut(s) 378, 381
BseSI GKGCMC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 176, 293
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 246
BssMI GATC 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 10, 306
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 362
BstF5I GGATG 2 cut(s) 150, 205
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 169
BtsCI GGATG 2 cut(s) 150, 205
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 2 cut(s) 61, 81
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 28
CviAII CATG 3 cut(s) 20, 102, 106
CviJI RGCY 6 cut(s) 127, 207, 215, 260, 317, 401
CviKI_1 RGCY 6 cut(s) 127, 207, 215, 260, 317, 401
DdeI CTNAG 1 cut(s) 362
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
DraIII CACNNNGTG 1 cut(s) 365
EcoT22I ATGCAT 1 cut(s) 107
FaeI CATG 3 cut(s) 23, 105, 109
FatI CATG 3 cut(s) 19, 101, 105
FauNDI CATATG 1 cut(s) 175
FbaI TGATCA 1 cut(s) 246
FokI GGATG 2 cut(s) 157, 212
GlaI GCGC 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 29
HhaI GCGC 1 cut(s) 28
Hin1II CATG 3 cut(s) 23, 105, 109
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 4 cut(s) 119, 236, 271, 334
Hpy166II GTNNAC 2 cut(s) 6, 167
Hpy188I TCNGA 3 cut(s) 112, 280, 396
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 2 cut(s) 6, 167
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 2 cut(s) 10, 306
HpyCH4V TGCA 5 cut(s) 13, 32, 105, 159, 167
HpyF3I CTNAG 1 cut(s) 362
Hsp92II CATG 3 cut(s) 23, 105, 109
HspAI GCGC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 3 cut(s) 42, 240, 246
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 5 cut(s) 46, 139, 154, 218, 382
MlyI GAGTC 2 cut(s) 230, 265
MnlI CCTC 2 cut(s) 399, 402
Mph1103I ATGCAT 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 3 cut(s) 290, 339, 403
MslI CAYNNNNRTG 2 cut(s) 18, 266
NdeI CATATG 1 cut(s) 175
NdeII GATC 1 cut(s) 246
NlaIII CATG 3 cut(s) 23, 105, 109
NmuCI GTSAC 1 cut(s) 377
NsiI ATGCAT 1 cut(s) 107
NspI RCATGY 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 2 cut(s) 119, 334
PflMI CCANNNNNTGG 1 cut(s) 176
PleI GAGTC 2 cut(s) 230, 265
PpsI GAGTC 2 cut(s) 230, 265
PsiI TTATAA 2 cut(s) 39, 75
RseI CAYNNNNRTG 2 cut(s) 18, 266
SaqAI TTAA 3 cut(s) 290, 339, 403
Sau3AI GATC 1 cut(s) 246
SchI GAGTC 2 cut(s) 230, 265
SduI GDGCHC 1 cut(s) 169
SetI ASST 4 cut(s) 129, 209, 217, 403
SfcI CTRYAG 1 cut(s) 186
SgeI CNNG 8 cut(s) 19, 32, 41, 114, 118, 239, 245, 342
SmiMI CAYNNNNRTG 2 cut(s) 18, 266
Sse9I AATT 5 cut(s) 46, 139, 154, 218, 382
TaaI ACNGT 2 cut(s) 10, 306
TasI AATT 5 cut(s) 46, 139, 154, 218, 382
TfiI GAWTC 2 cut(s) 119, 334
Tru1I TTAA 3 cut(s) 290, 339, 403
Tru9I TTAA 3 cut(s) 290, 339, 403
TscAI CASTG 2 cut(s) 61, 88
TseFI GTSAC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 36, 132, 297
TspRI CASTG 2 cut(s) 61, 88
Van91I CCANNNNNTGG 1 cut(s) 176
VneI GTGCAC 1 cut(s) 165
XapI RAATTY 1 cut(s) 218
XceI RCATGY 1 cut(s) 109
XmnI GAANNNNTTC 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.