Rh6AG277900

Patellin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017430
Physical Location & Seq
Reverse (-)
47240155 .. 47240559
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG277900.1

Sequence Viewer

Length: 405 bp
ATGTTCACGGTGCATTTACATGAAGCACCTGCACTTTATAAAAAAAATTATGTCAGTGAGAGAAGGCACTTTTATAAAAGCACTGCCAAACAATCCCACTCATGCATGTCTGATGATGAATCAAAGCTTACATTATTGAATTGGATGTCAATAAATTGCATAAGTGCACCATCATGTGGGAACTCTGTAGTTGGGTGGGATGTGAGCTATGGAGCTGAATTTGTTCCTGTTCCTGACTCTATACTGATCATTCAAACAGCCACAAAGATGACTCCATCTGATGAACCATTAAAAGGGATTTCACAGTTTGTTGGAACTTCAATAGGAACTTGGAATCGTAAAATCCCTGTTAAAGACACACTAAGTGATGGTCATGGTCACAATTCTCCTCCTCCGAGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

134

Amino Acids

14.79

Weight (kDa)

7.77

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOLD_PATL1_C PF25099 63 - 97 2.2e-06 Patellin-1-like, C-terminal GOLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 39, 75
AarI CACCTGC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 37
AccB7I CCANNNNNTGG 1 cut(s) 176
AcsI RAATTY 1 cut(s) 218
AdeI CACNNNGTG 1 cut(s) 365
AfiI CCNNNNNNNGG 2 cut(s) 176, 293
AgsI TTSAA 3 cut(s) 139, 254, 321
AluBI AGCT 4 cut(s) 127, 207, 215, 401
AluI AGCT 4 cut(s) 127, 207, 215, 401
Alw21I GWGCWC 1 cut(s) 169
Alw44I GTGCAC 1 cut(s) 165
ApaLI GTGCAC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 169
BccI CCATC 3 cut(s) 178, 283, 362
BclI TGATCA 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 37
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 293
BseGI GGATG 2 cut(s) 150, 205
BseLI CCNNNNNNNGG 2 cut(s) 176, 293
BseRI GAGGAG 2 cut(s) 378, 381
BseSI GKGCMC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 176, 293
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 246
BspMI ACCTGC 1 cut(s) 37
BssMI GATC 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 10, 306
BstDEI CTNAG 1 cut(s) 362
BstF5I GGATG 2 cut(s) 150, 205
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 169
BtsCI GGATG 2 cut(s) 150, 205
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 2 cut(s) 61, 81
BveI ACCTGC 1 cut(s) 37
CviAII CATG 5 cut(s) 20, 102, 106, 174, 374
CviJI RGCY 5 cut(s) 127, 207, 215, 260, 401
CviKI_1 RGCY 5 cut(s) 127, 207, 215, 260, 401
DdeI CTNAG 1 cut(s) 362
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
DraIII CACNNNGTG 1 cut(s) 365
EcoT22I ATGCAT 1 cut(s) 107
FaeI CATG 5 cut(s) 23, 105, 109, 177, 377
FatI CATG 5 cut(s) 19, 101, 105, 173, 373
FbaI TGATCA 1 cut(s) 246
FokI GGATG 2 cut(s) 157, 212
Hin1II CATG 5 cut(s) 23, 105, 109, 177, 377
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 4 cut(s) 119, 236, 271, 334
Hpy166II GTNNAC 2 cut(s) 6, 167
Hpy188I TCNGA 3 cut(s) 112, 280, 396
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 2 cut(s) 6, 167
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 2 cut(s) 10, 306
HpyCH4V TGCA 5 cut(s) 13, 32, 105, 159, 167
HpyF3I CTNAG 1 cut(s) 362
Hsp92II CATG 5 cut(s) 23, 105, 109, 177, 377
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 4 cut(s) 42, 240, 246, 360
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 5 cut(s) 46, 139, 154, 218, 382
MlyI GAGTC 2 cut(s) 230, 265
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 2 cut(s) 399, 402
Mph1103I ATGCAT 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 3 cut(s) 290, 351, 403
MslI CAYNNNNRTG 3 cut(s) 18, 172, 266
NdeII GATC 1 cut(s) 246
NlaIII CATG 5 cut(s) 23, 105, 109, 177, 377
NmuCI GTSAC 1 cut(s) 377
NsiI ATGCAT 1 cut(s) 107
NspI RCATGY 1 cut(s) 109
PaqCI CACCTGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 2 cut(s) 119, 334
PflMI CCANNNNNTGG 1 cut(s) 176
PleI GAGTC 2 cut(s) 230, 265
PpsI GAGTC 2 cut(s) 230, 265
PsiI TTATAA 2 cut(s) 39, 75
RseI CAYNNNNRTG 3 cut(s) 18, 172, 266
SaqAI TTAA 3 cut(s) 290, 351, 403
Sau3AI GATC 1 cut(s) 246
SchI GAGTC 2 cut(s) 230, 265
SduI GDGCHC 1 cut(s) 169
SetI ASST 5 cut(s) 31, 129, 209, 217, 403
SfcI CTRYAG 1 cut(s) 186
SmiMI CAYNNNNRTG 3 cut(s) 18, 172, 266
Sse9I AATT 5 cut(s) 46, 139, 154, 218, 382
TaaI ACNGT 2 cut(s) 10, 306
TasI AATT 5 cut(s) 46, 139, 154, 218, 382
TfiI GAWTC 2 cut(s) 119, 334
Tru1I TTAA 3 cut(s) 290, 351, 403
Tru9I TTAA 3 cut(s) 290, 351, 403
TscAI CASTG 2 cut(s) 61, 88
TseFI GTSAC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 36, 132, 297
TspRI CASTG 2 cut(s) 61, 88
Van91I CCANNNNNTGG 1 cut(s) 176
VneI GTGCAC 1 cut(s) 165
XapI RAATTY 1 cut(s) 218
XceI RCATGY 1 cut(s) 109
XmnI GAANNNNTTC 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.