Rh4BG154800

Patellin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017430
Physical Location & Seq
Reverse (-)
27872661 .. 27876797
4137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG154800.1

Sequence Viewer

Length: 240 bp
ATGAGAAGTGCACCATCATATGGGAACTCTGTAGTTGGGTGGGATGTGAGCTATGGAGCTGAATTTGTTCCTGACTCTATACTGATCATTCAAACAGCCACAAAGATGACTCCATCTGATGAACCATTAAAAGGGATTTCACAGTTTGTTGGAGCAGCAGGAACTTGGAATCTTAAAATCCCTGTTAAAGACACACTAAGTGATGGTCATCGTCACAATTCTCCTCCTCCGAGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

79

Amino Acids

8.47

Weight (kDa)

6.71

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOLD_PATL1_C PF25099 10 - 54 2.2e-07 Patellin-1-like, C-terminal GOLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 20
AcsI RAATTY 1 cut(s) 62
AdeI CACNNNGTG 1 cut(s) 200
AfiI CCNNNNNNNGG 2 cut(s) 20, 131
AgsI TTSAA 1 cut(s) 92
AluBI AGCT 3 cut(s) 51, 59, 236
AluI AGCT 3 cut(s) 51, 59, 236
Alw21I GWGCWC 1 cut(s) 13
Alw44I GTGCAC 1 cut(s) 9
ApaLI GTGCAC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 167
BccI CCATC 3 cut(s) 22, 121, 197
BclI TGATCA 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 207
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 131
Bse8I GATNNNNATC 1 cut(s) 207
BseGI GGATG 1 cut(s) 49
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 20, 131
BseRI GAGGAG 2 cut(s) 213, 216
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 13
BslI CCNNNNNNNGG 2 cut(s) 20, 131
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 84
BssMI GATC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 49
CviJI RGCY 4 cut(s) 51, 59, 98, 236
CviKI_1 RGCY 4 cut(s) 51, 59, 98, 236
DdeI CTNAG 1 cut(s) 197
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
DraIII CACNNNGTG 1 cut(s) 200
FaiI YATR 4 cut(s) 19, 21, 54, 80
FauNDI CATATG 1 cut(s) 19
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
HinfI GANTC 3 cut(s) 74, 109, 169
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 2 cut(s) 118, 231
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 1 cut(s) 11
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 56, 152
LpnPI CCDG 3 cut(s) 84, 144, 195
Lsp1109I GCAGC 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 62, 217
MlyI GAGTC 2 cut(s) 68, 103
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 2 cut(s) 234, 237
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 4 cut(s) 128, 174, 186, 238
MslI CAYNNNNRTG 1 cut(s) 104
NdeI CATATG 1 cut(s) 19
NdeII GATC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 20
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 2 cut(s) 68, 103
PpsI GAGTC 2 cut(s) 68, 103
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 4 cut(s) 128, 174, 186, 238
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 84
SchI GAGTC 2 cut(s) 68, 103
SduI GDGCHC 1 cut(s) 13
SetI ASST 3 cut(s) 53, 61, 238
SfcI CTRYAG 1 cut(s) 30
SgeI CNNG 4 cut(s) 83, 171, 177, 194
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 2 cut(s) 62, 217
TaaI ACNGT 1 cut(s) 144
TasI AATT 2 cut(s) 62, 217
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 4 cut(s) 128, 174, 186, 238
Tru9I TTAA 4 cut(s) 128, 174, 186, 238
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 135
Van91I CCANNNNNTGG 1 cut(s) 20
VneI GTGCAC 1 cut(s) 9
XapI RAATTY 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.