Rh4AG152600

Patellin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017430
Physical Location & Seq
Reverse (-)
38613807 .. 38614466
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG152600.1

Sequence Viewer

Length: 249 bp
ATGAGAAGTGCACCATCATATGGGAACTCTGTAGTTGGGTGGGATGTGAGCTATGGAGTTGAATTTGTTCCTGTTCTTGACTCTATACTGATCATTCAAACAGCCACAAAGATGACTCCAACTGATGAACCATTAAAAGGGATTTCACAGTTTGTTGGAGCTTCAACAGGAACTTGGAATCTTAAAATCCCTGTTAAAGACACACTAAGTGATGGTCATGGTCACAATTCTCCTCCTCCGAGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

82

Amino Acids

8.74

Weight (kDa)

6.0

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOLD_PATL1_C PF25099 10 - 45 2.2e-06 Patellin-1-like, C-terminal GOLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 20
AcsI RAATTY 1 cut(s) 62
AdeI CACNNNGTG 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 20, 137
AgsI TTSAA 3 cut(s) 62, 98, 165
AluBI AGCT 3 cut(s) 51, 161, 245
AluI AGCT 3 cut(s) 51, 161, 245
Alw21I GWGCWC 1 cut(s) 13
Alw44I GTGCAC 1 cut(s) 9
ApaLI GTGCAC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 13
BccI CCATC 2 cut(s) 22, 206
BclI TGATCA 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 137
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 2 cut(s) 20, 137
BseRI GAGGAG 2 cut(s) 222, 225
BseSI GKGCMC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 13
BslI CCNNNNNNNGG 2 cut(s) 20, 137
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 90
BssMI GATC 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 49
CviAII CATG 1 cut(s) 218
CviJI RGCY 4 cut(s) 51, 104, 161, 245
CviKI_1 RGCY 4 cut(s) 51, 104, 161, 245
DdeI CTNAG 1 cut(s) 206
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
DraIII CACNNNGTG 1 cut(s) 209
FaeI CATG 1 cut(s) 221
FaiI YATR 5 cut(s) 19, 21, 54, 86, 219
FatI CATG 1 cut(s) 217
FauNDI CATATG 1 cut(s) 19
FbaI TGATCA 1 cut(s) 90
FokI GGATG 1 cut(s) 56
Hin1II CATG 1 cut(s) 221
HinfI GANTC 3 cut(s) 80, 115, 178
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 11
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 3 cut(s) 84, 153, 204
MaeIII GTNAC 1 cut(s) 221
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 62, 226
MlyI GAGTC 2 cut(s) 74, 109
MmeI TCCRAC 2 cut(s) 136, 143
MnlI CCTC 2 cut(s) 243, 246
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 4 cut(s) 134, 183, 195, 247
MslI CAYNNNNRTG 1 cut(s) 110
NdeI CATATG 1 cut(s) 19
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 178
PflMI CCANNNNNTGG 1 cut(s) 20
PleI GAGTC 2 cut(s) 74, 109
PpsI GAGTC 2 cut(s) 74, 109
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 4 cut(s) 134, 183, 195, 247
Sau3AI GATC 1 cut(s) 90
SchI GAGTC 2 cut(s) 74, 109
SduI GDGCHC 1 cut(s) 13
SetI ASST 3 cut(s) 53, 163, 247
SfcI CTRYAG 1 cut(s) 30
SgeI CNNG 6 cut(s) 83, 89, 180, 186, 203, 230
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 2 cut(s) 62, 226
TaaI ACNGT 1 cut(s) 150
TasI AATT 2 cut(s) 62, 226
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 4 cut(s) 134, 183, 195, 247
Tru9I TTAA 4 cut(s) 134, 183, 195, 247
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 141
Van91I CCANNNNNTGG 1 cut(s) 20
VneI GTGCAC 1 cut(s) 9
XapI RAATTY 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.