Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013866

Physical Location & Seq

Genomic Coordinates Forward (+)

455925 .. 458080

Gene Structure 2156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCCGATAACAAGGCGGTTACGATCCGAACCAGGAAGTTCATGACAAATCGTCTTCTCTCCAGGAAGCAATTCGTCATCGATGTTTTGCATCCAGGAAGACCAAACGTCTCCAAGGCCGAGTTGAAGGAGAAACTGGCAAGGATGTACGAAGTGAAGGATACAAATGCCATCTTTGTTTTCAAGTTCCGCACCCATTTTGGAGGGGGTAAATCCACTGGTTTTGGCCTGATTTATGATTCTGTAGAGAATGCCAAGAAGTTTGAGCCAAAGTACAGGCTCATCAGGAATGGACTGGACAAAAAGGTGGATAAGTCAAGGAAGCAACTCAAGGAAAGGAAGAACAGAGCTAAGAAGATCCGTGGAGTAAAGAAGACCAAGGCTGGTGATGCTGCCAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S24e

Protein Analysis

135

Amino Acids

15.6

Weight (kDa)

10.72

Isoelectric Point (pI)

11.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S24e	PF01282	7 - 98	9.7e-40	Ribosomal protein S24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04920
fragaria_vesca	FvH4_6g03600 FvH4_6g03600 FvH4_6g03600
pyrus_communis	pycom12g21780
rosa_chinensis	RchiOBHm_Chr2g0084801
rosa_laevigata	RLG00000015640
rosa_multiflora	Rmu_sc0015119.1_g000002 Rmu_ssc0000436.1_g000002
rosa_rugosa	Rorug01G0456400
rosa_samantha	Rh2AG003500 Rh2BG005100 Rh2CG005500 Rh2DG004900 Rh6BG332700 Rh6DG325900
rosa_wichuraiana	Rw2G000400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	17, 190
AclWI	GGATC	2 cut(s)	19, 352
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	149, 275
AgsI	TTSAA	2 cut(s)	127, 184
AhdI	GACNNNNNGTC	2 cut(s)	51, 107
AjnI	CCWGG	3 cut(s)	32, 62, 94
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	2 cut(s)	19, 352
AoxI	GGCC	3 cut(s)	3, 117, 226
ApeKI	GCWGC	1 cut(s)	392
Asp700I	GAANNNNTTC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	398
BbsI	GAAGAC	3 cut(s)	47, 106, 380
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	3 cut(s)	34, 64, 96
BciVI	GTATCC	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	115
BfmI	CTRYAG	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	3 cut(s)	34, 64, 96
BmeRI	GACNNNNNGTC	2 cut(s)	51, 107
BmrFI	CCNGG	3 cut(s)	34, 64, 96
BmsI	GCATC	2 cut(s)	100, 379
BpiI	GAAGAC	3 cut(s)	47, 106, 380
BpmI	CTGGAG	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	314
Bsa29I	ATCGAT	1 cut(s)	81
BsaJI	CCNNGG	3 cut(s)	114, 361, 378
Bse1I	ACTGG	3 cut(s)	141, 223, 300
BseBI	CCWGG	3 cut(s)	34, 64, 96
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	3 cut(s)	114, 361, 378
BseGI	GGATG	2 cut(s)	91, 150
BseNI	ACTGG	3 cut(s)	141, 223, 300
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	3 cut(s)	5, 119, 228
BshVI	ATCGAT	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	5, 119, 228
Bsp143I	GATC	2 cut(s)	24, 357
BspACI	CCGC	2 cut(s)	17, 190
BspANI	GGCC	3 cut(s)	5, 119, 228
BspDI	ATCGAT	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	42
BspPI	GGATC	2 cut(s)	19, 352
BsrI	ACTGG	3 cut(s)	141, 223, 300
BssECI	CCNNGG	3 cut(s)	114, 361, 378
BssMI	GATC	2 cut(s)	24, 357
BssT1I	CCWWGG	2 cut(s)	114, 378
Bst2UI	CCWGG	3 cut(s)	34, 64, 96
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	2 cut(s)	91, 150
BstKTI	GATC	2 cut(s)	27, 360
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	24, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	3 cut(s)	34, 64, 96
BstSCI	CCNGG	3 cut(s)	32, 62, 94
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	3 cut(s)	47, 106, 380
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
Bsu15I	ATCGAT	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	3 cut(s)	5, 119, 228
BsuTUI	ATCGAT	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	91, 150
BtsIMutI	CAGTG	1 cut(s)	216
CciI	TCATGA	1 cut(s)	42
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	148, 274
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	7 cut(s)	5, 119, 228, 268, 280, 350, 383
CviKI_1	RGCY	7 cut(s)	5, 119, 228, 268, 280, 350, 383
CviQI	GTAC	2 cut(s)	148, 274
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	2 cut(s)	26, 359
DpnII	GATC	2 cut(s)	24, 357
DriI	GACNNNNNGTC	2 cut(s)	51, 107
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	2 cut(s)	51, 107
Eco130I	CCWWGG	2 cut(s)	114, 378
EcoRII	CCWGG	3 cut(s)	32, 62, 94
EcoT14I	CCWWGG	2 cut(s)	114, 378
ErhI	CCWWGG	2 cut(s)	114, 378
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	44, 237
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	2 cut(s)	78, 157
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	3 cut(s)	5, 119, 228
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	239
HphI	GGTGA	1 cut(s)	398
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	2 cut(s)	43, 286
HpyAV	CCTTC	2 cut(s)	121, 151
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	24, 357
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	2 cut(s)	100, 379
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	26, 359
MboI	GATC	2 cut(s)	24, 357
MboII	GAAGA	5 cut(s)	47, 111, 352, 367, 385
MflI	RGATCY	1 cut(s)	357
MluCI	AATT	1 cut(s)	71
MnlI	CCTC	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	71
MspR9I	CCNGG	3 cut(s)	34, 64, 96
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	3 cut(s)	34, 64, 96
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	2 cut(s)	24, 357
NlaIII	CATG	1 cut(s)	46
NmeAIII	GCCGAG	1 cut(s)	145
PagI	TCATGA	1 cut(s)	42
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	239
PfoI	TCCNGGA	2 cut(s)	62, 94
PkrI	GCNGC	1 cut(s)	394
Psp6I	CCWGG	3 cut(s)	32, 62, 94
PspGI	CCWGG	3 cut(s)	32, 62, 94
PsuI	RGATCY	1 cut(s)	357
RsaI	GTAC	2 cut(s)	149, 275
RsaNI	GTAC	2 cut(s)	148, 274
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	2 cut(s)	24, 357
ScrFI	CCNGG	3 cut(s)	34, 64, 96
SetI	ASST	3 cut(s)	111, 309, 352
SfaNI	GCATC	2 cut(s)	100, 379
SfcI	CTRYAG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	17, 190
StyD4I	CCNGG	3 cut(s)	32, 62, 94
StyI	CCWWGG	2 cut(s)	114, 378
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	71
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	239
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	1 cut(s)	392
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.