RchiOBHm_Chr2g0087311

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018576
Physical Location & Seq
Forward (+)
2115437 .. 2116129
693 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
ATGAAGATAGAAGGAAGGAAGGCTGTTAAAGATGTCCCTTGCTTTTGGGTTACAGCAATGTATGCTAACAAGATAATCCGTAAGGAGATTGCAAAGCACGATGAAGATGCTCTCGAATTCCTGAAGGATATCAAGTCATGTAGGACGGATGATCTAACAGGATTCCAGCTGGAATTCATGTTTGATTCTTCCAATCCTTATTTCAAAAATGAGGTCCTCACCAAAAAGTATGAGCTGAAGGATGGCGGAGAGTACTGTACATTCTTGATGGCAATTGGGACTGAAATCAACTGGTATCCTGGCAAAACCTTGACAGAAAGTATTGAGAAAATGACCATTGGGTCTGAGGTTGTTCAAGTAGCCCAAAACATGTCAAAGTTTCTTCAACTTCTTTGCTGCGAAAACTCATCGGACTTCTCTTTGTTTGGATGA

Protein Analysis

143

Amino Acids

16.43

Weight (kDa)

5.1

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 6 - 112 4.4e-30 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018576)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0087311 RchiOBHm_Chr7g0219731
rosa_laevigata RLG00000002274
rosa_multiflora Rmu_sc0041444.1_g000001
rosa_roxburghii Rroxscaffold_2G00153860
rosa_rugosa Rorug07G0187100
rosa_samantha Rh2BG025700 Rh7AG331100 Rh7CG348500 Rh7DG326600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 340
AciI CCGC 1 cut(s) 246
AcsI RAATTY 2 cut(s) 116, 173
AcuI CTGAAG 2 cut(s) 143, 257
AfaI GTAC 2 cut(s) 254, 259
AflIII ACRYGT 1 cut(s) 369
AgsI TTSAA 3 cut(s) 205, 356, 386
AjnI CCWGG 1 cut(s) 298
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 2 cut(s) 169, 235
AluI AGCT 2 cut(s) 169, 235
ApeKI GCWGC 1 cut(s) 396
ApoI RAATTY 2 cut(s) 116, 173
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 211
AvaII GGWCC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 383
BccI CCATC 2 cut(s) 236, 262
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BciT130I CCWGG 1 cut(s) 300
BciVI GTATCC 1 cut(s) 306
BfuI GTATCC 1 cut(s) 306
BisI GCNGC 1 cut(s) 397
BlsI GCNGC 1 cut(s) 398
BmcAI AGTACT 1 cut(s) 254
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 154, 247
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 383
BslFI GGGAC 2 cut(s) 20, 292
BsmFI GGGAC 2 cut(s) 20, 292
Bsp1407I TGTACA 1 cut(s) 257
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 63
BsrGI TGTACA 1 cut(s) 257
BsrI ACTGG 1 cut(s) 296
BssMI GATC 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 154, 247
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 300
BstNSI RCATGY 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 383
BsuI GTATCC 1 cut(s) 306
BtsCI GGATG 2 cut(s) 154, 247
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 253, 258
CviAII CATG 3 cut(s) 138, 178, 370
CviJI RGCY 4 cut(s) 23, 169, 235, 362
CviKI_1 RGCY 4 cut(s) 23, 169, 235, 362
CviQI GTAC 2 cut(s) 253, 258
DdeI CTNAG 1 cut(s) 345
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
DrdI GACNNNNNNGTC 1 cut(s) 340
DseDI GACNNNNNNGTC 1 cut(s) 340
EciI GGCGGA 1 cut(s) 261
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 214
Eco57I CTGAAG 2 cut(s) 143, 257
EcoO109I RGGNCCY 1 cut(s) 214
EcoRI GAATTC 2 cut(s) 116, 173
EcoRII CCWGG 1 cut(s) 298
EcoRV GATATC 1 cut(s) 130
FaeI CATG 3 cut(s) 141, 181, 373
FaiI YATR 5 cut(s) 63, 139, 179, 231, 371
FaqI GGGAC 2 cut(s) 20, 292
FatI CATG 3 cut(s) 137, 177, 369
Fnu4HI GCNGC 1 cut(s) 397
FokI GGATG 2 cut(s) 161, 254
Fsp4HI GCNGC 1 cut(s) 397
GluI GCNGC 1 cut(s) 397
Hin1II CATG 3 cut(s) 141, 181, 373
HinfI GANTC 2 cut(s) 162, 185
HphI GGTGA 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 346, 412
Hpy188III TCNNGA 3 cut(s) 113, 121, 265
HpyAV CCTTC 5 cut(s) 5, 9, 13, 118, 232
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 3 cut(s) 141, 181, 373
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 7 cut(s) 134, 144, 155, 179, 277, 285, 312
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 4 cut(s) 16, 116, 180, 374
MfeI CAATTG 1 cut(s) 273
MluCI AATT 3 cut(s) 116, 173, 273
MnlI CCTC 3 cut(s) 205, 227, 340
MseI TTAA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 300
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 1 cut(s) 151
NlaIII CATG 3 cut(s) 141, 181, 373
NspI RCATGY 1 cut(s) 373
PciI ACATGT 1 cut(s) 369
PfeI GAWTC 2 cut(s) 162, 185
PkrI GCNGC 1 cut(s) 398
PpuMI RGGWCCY 1 cut(s) 214
PscI ACATGT 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspPI GGNCC 1 cut(s) 214
PspPPI RGGWCCY 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 2 cut(s) 254, 259
RsaNI GTAC 2 cut(s) 253, 258
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 397
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 214
ScaI AGTACT 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 300
SetI ASST 5 cut(s) 171, 216, 237, 311, 351
SfaNI GCATC 1 cut(s) 97
SinI GGWCC 1 cut(s) 214
Sse9I AATT 3 cut(s) 116, 173, 273
SsiI CCGC 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 114
TasI AATT 3 cut(s) 116, 173, 273
TatI WGTACW 2 cut(s) 252, 257
TfiI GAWTC 2 cut(s) 162, 185
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseI GCWGC 1 cut(s) 396
TspDTI ATGAA 3 cut(s) 17, 117, 166
TspGWI ACGGA 2 cut(s) 68, 161
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 2 cut(s) 116, 173
XceI RCATGY 1 cut(s) 373
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.