Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0018576

Physical Location & Seq

Genomic Coordinates Reverse (-)

39413923 .. 39414403

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG326600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGATGAAGAAGCTCCTGAAGCAAACAAAGCAGAAAGGAGTACCTGACTTTTGGATTGTGGCAATGATGCATCATTTCATACTTGCAGATGTGATTAAACTTCATGATGTAAAGGCTCTCGAATGTCTCATTGATATCAAGTGCTGTAAGTTAGATAATCTGAATGGATTTGAGCTTGACTTCATCTGTGATCCTGAAAGGAATCTTCATTTCAAAAATCTAGTCCTGACTAAAACATTTTACGGCGAAATGGAGAGGACAATTGGGACAGAGATCAAGTGGTGCACACTACTCGACGAATGCTGCTTGACACGAGAGTATAACATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

110

Amino Acids

12.98

Weight (kDa)

6.4

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	7 - 94	9.2e-19	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018576)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087311 RchiOBHm_Chr7g0219731
rosa_laevigata	RLG00000002274
rosa_multiflora	Rmu_sc0041444.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153860
rosa_rugosa	Rorug07G0187100
rosa_samantha	Rh2BG025700 Rh7AG331100 Rh7CG348500 Rh7DG326600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	42
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	2 cut(s)	13, 175
AluI	AGCT	2 cut(s)	13, 175
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	1 cut(s)	131
Alw44I	GTGCAC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	185
ApaLI	GTGCAC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	303
ArsI	GACNNNNNNTTYG	2 cut(s)	207, 239
AseI	ATTAAT	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	287
BauI	CACGAG	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	305
BmsI	GCATC	2 cut(s)	57, 79
Bse3DI	GCAATG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	190, 273
BspHI	TCATGA	1 cut(s)	103
BspPI	GGATC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	69
BssMI	GATC	2 cut(s)	190, 273
BssSI	CACGAG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	312
BstKTI	GATC	2 cut(s)	193, 276
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	190, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 28
BstSLI	GKGCMC	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	290
CciI	TCATGA	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	3 cut(s)	13, 116, 175
CviKI_1	RGCY	3 cut(s)	13, 116, 175
CviQI	GTAC	1 cut(s)	41
DpnI	GATC	2 cut(s)	192, 275
DpnII	GATC	2 cut(s)	190, 273
Eco32I	GATATC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	72
FaeI	CATG	1 cut(s)	107
FaiI	YATR	3 cut(s)	80, 105, 321
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	304
Fsp4HI	GCNGC	1 cut(s)	304
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	1 cut(s)	304
Hin1II	CATG	1 cut(s)	107
HinfI	GANTC	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	5 cut(s)	16, 104, 119, 194, 226
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	1 cut(s)	299
HpyCH4V	TGCA	3 cut(s)	70, 86, 285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 28
Hsp92II	CATG	1 cut(s)	107
Kzo9I	GATC	2 cut(s)	190, 273
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	4 cut(s)	29, 57, 207, 239
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	2 cut(s)	57, 79
MaeI	CTAG	1 cut(s)	221
MalI	GATC	2 cut(s)	192, 275
MboI	GATC	2 cut(s)	190, 273
MboII	GAAGA	2 cut(s)	19, 197
MfeI	CAATTG	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	2 cut(s)	261, 328
MnlI	CCTC	1 cut(s)	249
Mph1103I	ATGCAT	1 cut(s)	72
MseI	TTAA	2 cut(s)	96, 327
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	305
MwoI	GCNNNNNNNGC	2 cut(s)	19, 28
NdeII	GATC	2 cut(s)	190, 273
NlaIII	CATG	1 cut(s)	107
NsiI	ATGCAT	1 cut(s)	72
PagI	TCATGA	1 cut(s)	103
PctI	GAATGC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	327
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	96, 327
SatI	GCNGC	1 cut(s)	304
Sau3AI	GATC	2 cut(s)	190, 273
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	3 cut(s)	15, 46, 177
SfaNI	GCATC	2 cut(s)	57, 79
Sse9I	AATT	2 cut(s)	261, 328
SspMI	CTAG	1 cut(s)	221
TaqI	TCGA	2 cut(s)	120, 294
TasI	AATT	2 cut(s)	261, 328
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	2 cut(s)	96, 327
Tru9I	TTAA	2 cut(s)	96, 327
TseI	GCWGC	1 cut(s)	303
TspDTI	ATGAA	5 cut(s)	20, 67, 92, 172, 197
VneI	GTGCAC	1 cut(s)	283
VspI	ATTAAT	1 cut(s)	327
XspI	CTAG	1 cut(s)	221
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.