Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0018576

Physical Location & Seq

Genomic Coordinates Reverse (-)

38023719 .. 38024255

Gene Structure 537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG331100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGATGAAGAAGCTCCTGAAGCAAACAAAGCAGAAAGGAGTACCTGACTTTTGGATTGTGGCAATGATGCATCATTTCATACTTGCTGATGTGATTAAACTTCACGATGTAAAGGCTCTCGAATGTCTCATTGATATCAAGTGTTGTAAGTTAGATAATCTGAATGGATTTGAGCTCGACTTCATCTTTGATCCTGAAAGGAATCTTCATTTCAAAAATCCAGTCTTGACTAAAACATTTTACGGCGAAATGGAGAGGACAATTGGGACAGAGATCAAGTGGTGCACACTACTCGACGAATGCTGCTTGACACGAGATTATAACATTAGGAGGAAAGTATTGAAATCCAAAAAAGGGGAAAGCTTCTTTAACTTGTTTAACAATACTCCTGGAATTGATAAACCATTATACGAAGGTGCAATTCCACGAGATTATGCAATTGGCTTAATAATTCAAGACAAAATTATTCCTCATGCCATATCATGGTACAATGGGGATGAATATGAAGATGGCAAGAATGTGCTTAAGTTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

178

Amino Acids

20.82

Weight (kDa)

7.6

Isoelectric Point (pI)

25.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	7 - 166	1e-31	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018576)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087311 RchiOBHm_Chr7g0219731
rosa_laevigata	RLG00000002274
rosa_multiflora	Rmu_sc0041444.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153860
rosa_rugosa	Rorug07G0187100
rosa_samantha	Rh2BG025700 Rh7AG331100 Rh7CG348500 Rh7DG326600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	483
AclWI	GGATC	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	42, 488
AfiI	CCNNNNNNNGG	2 cut(s)	354, 483
AflII	CTTAAG	1 cut(s)	524
AgsI	TTSAA	3 cut(s)	214, 343, 455
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	3 cut(s)	13, 175, 363
AluI	AGCT	3 cut(s)	13, 175, 363
Alw21I	GWGCWC	2 cut(s)	177, 287
Alw26I	GTCTC	1 cut(s)	131
Alw44I	GTGCAC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	185
ApaLI	GTGCAC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	303
ArsI	GACNNNNNNTTYG	4 cut(s)	170, 202, 207, 239
BaeGI	GKGCMC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	177
BauI	CACGAG	2 cut(s)	312, 426
Bbv12I	GWGCWC	2 cut(s)	177, 287
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BciT130I	CCWGG	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	131
BfrI	CTTAAG	1 cut(s)	524
BisI	GCNGC	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	305
Bme1390I	CCNGG	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	57, 79
Bsc4I	CCNNNNNNNGG	2 cut(s)	354, 483
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	390
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	2 cut(s)	354, 483
BseMI	GCAATG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	290
BsiHKAI	GWGCWC	2 cut(s)	177, 287
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	2 cut(s)	354, 483
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	305
Bsp1286I	GDGCHC	2 cut(s)	177, 287
Bsp143I	GATC	2 cut(s)	190, 273
BspPI	GGATC	1 cut(s)	185
BspTI	CTTAAG	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	190, 273
BssSI	CACGAG	2 cut(s)	312, 426
Bst2BI	CACGAG	2 cut(s)	312, 426
Bst2UI	CCWGG	1 cut(s)	390
BstAFI	CTTAAG	1 cut(s)	524
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	2 cut(s)	193, 276
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	190, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 28
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstSLI	GKGCMC	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	290
BtsCI	GGATG	1 cut(s)	502
Csp6I	GTAC	2 cut(s)	41, 487
CviAII	CATG	2 cut(s)	473, 483
CviJI	RGCY	5 cut(s)	13, 116, 175, 363, 444
CviKI_1	RGCY	5 cut(s)	13, 116, 175, 363, 444
CviQI	GTAC	2 cut(s)	41, 487
DpnI	GATC	2 cut(s)	192, 275
DpnII	GATC	2 cut(s)	190, 273
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	388
EcoRV	GATATC	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	2 cut(s)	476, 486
FaiI	YATR	8 cut(s)	80, 321, 409, 435, 474, 479, 484, 504
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	472, 482
Fnu4HI	GCNGC	1 cut(s)	304
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	304
Hin1II	CATG	2 cut(s)	476, 486
HindIII	AAGCTT	1 cut(s)	361
HinfI	GANTC	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	6 cut(s)	16, 104, 119, 194, 226, 455
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	1 cut(s)	407
HpyCH4V	TGCA	4 cut(s)	70, 285, 419, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 28
Hsp92II	CATG	2 cut(s)	476, 486
Kzo9I	GATC	2 cut(s)	190, 273
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	6 cut(s)	29, 57, 207, 234, 375, 402
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	2 cut(s)	57, 79
MalI	GATC	2 cut(s)	192, 275
MboI	GATC	2 cut(s)	190, 273
MboII	GAAGA	3 cut(s)	19, 197, 518
MfeI	CAATTG	2 cut(s)	261, 438
MhlI	GDGCHC	2 cut(s)	177, 287
MluCI	AATT	6 cut(s)	261, 393, 420, 438, 450, 462
MnlI	CCTC	3 cut(s)	249, 324, 480
Mph1103I	ATGCAT	1 cut(s)	72
MseI	TTAA	5 cut(s)	96, 369, 378, 446, 525
MspCI	CTTAAG	1 cut(s)	524
MspR9I	CCNGG	1 cut(s)	390
MunI	CAATTG	2 cut(s)	261, 438
Mva1269I	GAATGC	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	19, 28
NdeII	GATC	2 cut(s)	190, 273
NlaIII	CATG	2 cut(s)	476, 486
NsiI	ATGCAT	1 cut(s)	72
PctI	GAATGC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	202
PflMI	CCANNNNNTGG	1 cut(s)	483
PfoI	TCCNGGA	1 cut(s)	388
PkrI	GCNGC	1 cut(s)	305
PsiI	TTATAA	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
RsaI	GTAC	2 cut(s)	42, 488
RsaNI	GTAC	2 cut(s)	41, 487
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	5 cut(s)	96, 369, 378, 446, 525
SatI	GCNGC	1 cut(s)	304
Sau3AI	GATC	2 cut(s)	190, 273
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	2 cut(s)	177, 287
SetI	ASST	5 cut(s)	15, 46, 177, 365, 418
SfaNI	GCATC	2 cut(s)	57, 79
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	6 cut(s)	261, 393, 420, 438, 450, 462
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	388
TaqI	TCGA	3 cut(s)	120, 177, 294
TasI	AATT	6 cut(s)	261, 393, 420, 438, 450, 462
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	5 cut(s)	96, 369, 378, 446, 525
Tru9I	TTAA	5 cut(s)	96, 369, 378, 446, 525
TseI	GCWGC	1 cut(s)	303
TspDTI	ATGAA	7 cut(s)	20, 67, 172, 197, 513, 519, 520
Van91I	CCANNNNNTGG	1 cut(s)	483
Vha464I	CTTAAG	1 cut(s)	524
VneI	GTGCAC	1 cut(s)	283
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.