Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018576

Physical Location & Seq

Genomic Coordinates Forward (+)

31197246 .. 31197721

Gene Structure 476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002274

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCAATGATGCATCATTACATACTTGCTGATGTGATTAAACTTCACGATGTAAAGGCTCTCGAATGTCTCACTATCAAGTGCCGTAAGTTAGATAATCCGAACGAATTTGAGCTTGACTTCATCTTTGATCCTGAAAGGAATCTTCATTTCAAAAATCTAGTCCTTACTAAAACATTTTACGGCGAAATGGAGAGGACAATCGGGACAGAGATCAAGTGGTGGAAACCACTCGACAAATGCTACTTGACACGAAAAATTGATAAACTACTATACGAAGGTGCGATTCCACGAGATTATGCAATTGGCTTAACAATTCGAGACAAAATTATTCCTCATGCCATATCATGGTACAATGGGGATGAATATGAAGATGGCAAGAATGTGCTTAAGTTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

134

Amino Acids

15.82

Weight (kDa)

6.51

Isoelectric Point (pI)

18.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	2 - 81	3.9e-11	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018576)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087311 RchiOBHm_Chr7g0219731
rosa_laevigata	RLG00000002274
rosa_multiflora	Rmu_sc0041444.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153860
rosa_rugosa	Rorug07G0187100
rosa_samantha	Rh2BG025700 Rh7AG331100 Rh7CG348500 Rh7DG326600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	348
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	348
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	74, 315
AlwI	GGATC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	107
ArsI	GACNNNNNNTTYG	4 cut(s)	110, 142, 147, 179
BauI	CACGAG	1 cut(s)	291
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	2 cut(s)	69, 199
BcoDI	GTCTC	2 cut(s)	74, 315
BfaI	CTAG	1 cut(s)	161
BfrI	CTTAAG	1 cut(s)	389
BmsI	GCATC	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	2 cut(s)	74, 315
BsmFI	GGGAC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	130, 213
BspPI	GGATC	1 cut(s)	125
BspTI	CTTAAG	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	12
BssMI	GATC	2 cut(s)	130, 213
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
BstAFI	CTTAAG	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	2 cut(s)	133, 216
BstMAI	GTCTC	2 cut(s)	74, 315
BstMBI	GATC	2 cut(s)	130, 213
BtsCI	GGATG	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	338, 348
CviJI	RGCY	3 cut(s)	59, 115, 309
CviKI_1	RGCY	3 cut(s)	59, 115, 309
CviQI	GTAC	1 cut(s)	352
DpnI	GATC	2 cut(s)	132, 215
DpnII	GATC	2 cut(s)	130, 213
EcoT22I	ATGCAT	1 cut(s)	15
FaeI	CATG	2 cut(s)	341, 351
FaiI	YATR	7 cut(s)	23, 274, 300, 339, 344, 349, 369
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	337, 347
FokI	GGATG	1 cut(s)	374
FspBI	CTAG	1 cut(s)	161
Hin1II	CATG	2 cut(s)	341, 351
HinfI	GANTC	2 cut(s)	142, 286
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	5 cut(s)	47, 62, 134, 205, 320
HpyAV	CCTTC	1 cut(s)	272
HpyCH4V	TGCA	2 cut(s)	13, 302
Hsp92II	CATG	2 cut(s)	341, 351
Kzo9I	GATC	2 cut(s)	130, 213
LpnPI	CCDG	1 cut(s)	147
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	161
MalI	GATC	2 cut(s)	132, 215
MboI	GATC	2 cut(s)	130, 213
MboII	GAAGA	2 cut(s)	137, 383
MfeI	CAATTG	1 cut(s)	303
MluCI	AATT	5 cut(s)	107, 258, 303, 315, 327
MnlI	CCTC	2 cut(s)	189, 345
Mph1103I	ATGCAT	1 cut(s)	15
MseI	TTAA	3 cut(s)	39, 311, 390
MspCI	CTTAAG	1 cut(s)	389
MunI	CAATTG	1 cut(s)	303
NdeII	GATC	2 cut(s)	130, 213
NlaIII	CATG	2 cut(s)	341, 351
NsiI	ATGCAT	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	142, 286
PflMI	CCANNNNNTGG	1 cut(s)	348
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	3 cut(s)	39, 311, 390
Sau3AI	GATC	2 cut(s)	130, 213
SetI	ASST	2 cut(s)	117, 283
SfaNI	GCATC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	5 cut(s)	107, 258, 303, 315, 327
SspMI	CTAG	1 cut(s)	161
TaqI	TCGA	3 cut(s)	63, 234, 319
TasI	AATT	5 cut(s)	107, 258, 303, 315, 327
TfiI	GAWTC	2 cut(s)	142, 286
Tru1I	TTAA	3 cut(s)	39, 311, 390
Tru9I	TTAA	3 cut(s)	39, 311, 390
TspDTI	ATGAA	5 cut(s)	112, 137, 378, 384, 385
Van91I	CCANNNNNTGG	1 cut(s)	348
Vha464I	CTTAAG	1 cut(s)	389
XapI	RAATTY	1 cut(s)	107
XspI	CTAG	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.