Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0018576

Physical Location & Seq

Genomic Coordinates Forward (+)

15764871 .. 15766116

Gene Structure 1246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0187100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCAACTACTATTCGACCATGGCACTTCAAAAGATGGAGGATTTCAATTTAGAATTGCTCCAAAAGCTCAGGAAATTCAAGTGTCAGAAGAGCTCAGCCAGTACTTGCATTCCTCGATTTGGGAGTTGAAAACGCAAGTCAAGGACTTAAGAAAAGAACTGGTTTCTCTTAGGCATGCTATTCTGGCCACGAAAGATGACCAATCTACGGAATACCAGAAGCACTTAATGGAAGAAGAGCAGAAGGTGGAGGTGTTAAAGCTGCGTTTGAAAATCGAAAAAGAGAGGAACAGATCACAGGCAAATGAAATGGCTTCTCTTAGGCATGAAACTCTAAGCTCCAATGAAATTCCAATTATTCAACATTTCATTGTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

126

Amino Acids

14.74

Weight (kDa)

6.3

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018576)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087311 RchiOBHm_Chr7g0219731
rosa_laevigata	RLG00000002274
rosa_multiflora	Rmu_sc0041444.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153860
rosa_rugosa	Rorug07G0187100
rosa_samantha	Rh2BG025700 Rh7AG331100 Rh7CG348500 Rh7DG326600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	75, 348
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	120, 208
AflII	CTTAAG	1 cut(s)	148
AgsI	TTSAA	6 cut(s)	30, 47, 80, 130, 271, 362
AluBI	AGCT	5 cut(s)	68, 94, 262, 339, 377
AluI	AGCT	5 cut(s)	68, 94, 262, 339, 377
Alw21I	GWGCWC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	2 cut(s)	75, 348
BalI	TGGCCA	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	1 cut(s)	29
BfrI	CTTAAG	1 cut(s)	148
BisI	GCNGC	1 cut(s)	263
BlpI	GCTNAGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	264
BmcAI	AGTACT	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 208
Bse1I	ACTGG	2 cut(s)	100, 165
BseDI	CCNNGG	1 cut(s)	19
BseLI	CCNNNNNNNGG	2 cut(s)	120, 208
BseMII	CTCAG	2 cut(s)	83, 109
BseNI	ACTGG	2 cut(s)	100, 165
BseXI	GCAGC	1 cut(s)	249
BshFI	GGCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	120, 208
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	293
Bsp1720I	GCTNAGC	1 cut(s)	95
Bsp19I	CCATGG	1 cut(s)	19
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	82, 108
BspQI	GCTCTTC	2 cut(s)	84, 231
BspTI	CTTAAG	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	100, 165
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	19
Bst6I	CTCTTC	2 cut(s)	84, 231
BstAFI	CTTAAG	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	5 cut(s)	69, 95, 170, 320, 335
BstDSI	CCRYGG	1 cut(s)	19
BstKTI	GATC	1 cut(s)	296
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 185
BstNSI	RCATGY	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	3 cut(s)	20, 176, 326
CviJI	RGCY	8 cut(s)	68, 94, 99, 188, 262, 314, 339, 377
CviKI_1	RGCY	8 cut(s)	68, 94, 99, 188, 262, 314, 339, 377
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	5 cut(s)	69, 95, 170, 320, 335
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	84, 231
EarI	CTCTTC	2 cut(s)	84, 231
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	3 cut(s)	23, 179, 329
FaiI	YATR	3 cut(s)	21, 177, 327
FatI	CATG	3 cut(s)	19, 175, 325
Fnu4HI	GCNGC	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	188
Hin1II	CATG	3 cut(s)	23, 179, 329
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	4, 109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 185
HpyF3I	CTNAG	5 cut(s)	69, 95, 170, 320, 335
Hsp92II	CATG	3 cut(s)	23, 179, 329
Kzo9I	GATC	1 cut(s)	293
LguI	GCTCTTC	2 cut(s)	84, 231
LmnI	GCTCC	2 cut(s)	64, 344
LpnPI	CCDG	6 cut(s)	56, 113, 146, 170, 230, 284
Lsp1109I	GCAGC	1 cut(s)	249
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	3 cut(s)	101, 245, 248
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	5 cut(s)	47, 54, 75, 348, 354
MluNI	TGGCCA	1 cut(s)	188
MnlI	CCTC	4 cut(s)	32, 124, 244, 279
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	4 cut(s)	149, 227, 257, 379
Msp20I	TGGCCA	1 cut(s)	188
MspCI	CTTAAG	1 cut(s)	148
Mva1269I	GAATGC	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	65, 185
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	3 cut(s)	23, 179, 329
NspI	RCATGY	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	179
PciSI	GCTCTTC	2 cut(s)	84, 231
PctI	GAATGC	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	96
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	2 cut(s)	84, 231
SaqAI	TTAA	4 cut(s)	149, 227, 257, 379
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	1 cut(s)	293
ScaI	AGTACT	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	7 cut(s)	70, 96, 249, 255, 264, 341, 379
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	5 cut(s)	47, 54, 75, 348, 354
SstI	GAGCTC	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	19
TaqI	TCGA	3 cut(s)	15, 116, 276
TasI	AATT	5 cut(s)	47, 54, 75, 348, 354
TatI	WGTACW	1 cut(s)	102
Tru1I	TTAA	4 cut(s)	149, 227, 257, 379
Tru9I	TTAA	4 cut(s)	149, 227, 257, 379
TseI	GCWGC	1 cut(s)	262
TspDTI	ATGAA	4 cut(s)	321, 342, 358, 360
TspGWI	ACGGA	1 cut(s)	224
Vha464I	CTTAAG	1 cut(s)	148
XapI	RAATTY	2 cut(s)	75, 348
XceI	RCATGY	1 cut(s)	179
ZrmI	AGTACT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.