Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018576

Physical Location & Seq

Genomic Coordinates Reverse (-)

38359029 .. 38359562

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19667

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAAGAAGTTCCTAAAGCAAACAAAGCAGAAAGGAGTACCTGACTTTTGGATTGTGGCAATGATGCATCATTTCATACTTGCTGATGTGATTAAACTTCACGATGTAAAGGCTCTCGAATGTCTCATTGATATCAAGTGCTGTAAGTTAGATAATCTGAATGGATTTGAGCTCGACTTCATCTTTGATCCTGAAAGGAATCTTCATTTCAAAAAACCAGTCCTGACTAAAACATTTTACGGCGAAATGGAGAGGACAATTGGGACAGAGATCAAGTGGTGCACACTACTCGACGAATGCTGCTTGACACGAGAGTATAACATTAGGAGGAAAGTATTGAAATCCAAAAAACGAGAAAGCTTCTTTAACTTGTTTAACAGTACTCCTAGAATTGATAAACCATTATACGAAGGTGCAATTCCACGAGATTATGCAATTGGCTTAATAATTCGAGACAAATTTATTCCTCATGCCATATCATGGTACAATGGGGATGAATATGAAGATGGCAAGAATGTGCTCAAGTTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

177

Amino Acids

20.98

Weight (kDa)

8.81

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	7 - 165	7.6e-31	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018576)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087311 RchiOBHm_Chr7g0219731
rosa_laevigata	RLG00000002274
rosa_multiflora	Rmu_sc0041444.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153860
rosa_rugosa	Rorug07G0187100
rosa_samantha	Rh2BG025700 Rh7AG331100 Rh7CG348500 Rh7DG326600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	480
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	458
AfaI	GTAC	3 cut(s)	39, 382, 485
AfiI	CCNNNNNNNGG	1 cut(s)	480
AgsI	TTSAA	2 cut(s)	211, 340
AluBI	AGCT	2 cut(s)	172, 360
AluI	AGCT	2 cut(s)	172, 360
Alw21I	GWGCWC	3 cut(s)	174, 284, 522
Alw26I	GTCTC	2 cut(s)	128, 447
Alw44I	GTGCAC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	182
ApaLI	GTGCAC	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	458
ArsI	GACNNNNNNTTYG	4 cut(s)	167, 199, 204, 236
Asp700I	GAANNNNTTC	1 cut(s)	8
BaeGI	GKGCMC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	174
BauI	CACGAG	2 cut(s)	309, 423
Bbv12I	GWGCWC	3 cut(s)	174, 284, 522
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	500
BceAI	ACGGC	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BcoDI	GTCTC	2 cut(s)	128, 447
BfaI	CTAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
BmcAI	AGTACT	1 cut(s)	382
BmsI	GCATC	2 cut(s)	54, 76
BpuEI	CTTGAG	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	287
BsiHKAI	GWGCWC	3 cut(s)	174, 284, 522
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmAI	GTCTC	2 cut(s)	128, 447
BsmFI	GGGAC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	302
Bsp1286I	GDGCHC	3 cut(s)	174, 284, 522
Bsp143I	GATC	2 cut(s)	187, 270
BspPI	GGATC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	218
BssMI	GATC	2 cut(s)	187, 270
BssSI	CACGAG	2 cut(s)	309, 423
Bst2BI	CACGAG	2 cut(s)	309, 423
Bst4CI	ACNGT	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	2 cut(s)	190, 273
BstMAI	GTCTC	2 cut(s)	128, 447
BstMBI	GATC	2 cut(s)	187, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstSLI	GKGCMC	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	499
Csp6I	GTAC	3 cut(s)	38, 381, 484
CviAII	CATG	2 cut(s)	470, 480
CviJI	RGCY	4 cut(s)	113, 172, 360, 441
CviKI_1	RGCY	4 cut(s)	113, 172, 360, 441
CviQI	GTAC	3 cut(s)	38, 381, 484
DpnI	GATC	2 cut(s)	189, 272
DpnII	GATC	2 cut(s)	187, 270
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	172
EcoRV	GATATC	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	2 cut(s)	473, 483
FaiI	YATR	8 cut(s)	77, 318, 406, 432, 471, 476, 481, 501
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	2 cut(s)	469, 479
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	1 cut(s)	506
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	1 cut(s)	301
Hin1II	CATG	2 cut(s)	473, 483
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	5 cut(s)	101, 116, 191, 223, 452
Hpy8I	GTNNAC	1 cut(s)	282
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4V	TGCA	4 cut(s)	67, 282, 416, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	473, 483
Kzo9I	GATC	2 cut(s)	187, 270
LpnPI	CCDG	4 cut(s)	54, 204, 231, 236
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	2 cut(s)	54, 76
MaeI	CTAG	1 cut(s)	387
MalI	GATC	2 cut(s)	189, 272
MboI	GATC	2 cut(s)	187, 270
MboII	GAAGA	3 cut(s)	16, 194, 515
MfeI	CAATTG	2 cut(s)	258, 435
MhlI	GDGCHC	3 cut(s)	174, 284, 522
MluCI	AATT	6 cut(s)	258, 390, 417, 435, 447, 458
MnlI	CCTC	3 cut(s)	246, 321, 477
Mph1103I	ATGCAT	1 cut(s)	69
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	4 cut(s)	93, 366, 375, 443
MunI	CAATTG	2 cut(s)	258, 435
Mva1269I	GAATGC	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeII	GATC	2 cut(s)	187, 270
NlaIII	CATG	2 cut(s)	473, 483
NsiI	ATGCAT	1 cut(s)	69
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	199
PflMI	CCANNNNNTGG	1 cut(s)	480
PkrI	GCNGC	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	174
RsaI	GTAC	3 cut(s)	39, 382, 485
RsaNI	GTAC	3 cut(s)	38, 381, 484
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	4 cut(s)	93, 366, 375, 443
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	2 cut(s)	187, 270
ScaI	AGTACT	1 cut(s)	382
SduI	GDGCHC	3 cut(s)	174, 284, 522
SetI	ASST	4 cut(s)	43, 174, 362, 415
SfaNI	GCATC	2 cut(s)	54, 76
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	6 cut(s)	258, 390, 417, 435, 447, 458
SspMI	CTAG	1 cut(s)	387
SstI	GAGCTC	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	380
TaqI	TCGA	4 cut(s)	117, 174, 291, 451
TasI	AATT	6 cut(s)	258, 390, 417, 435, 447, 458
TatI	WGTACW	1 cut(s)	380
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	4 cut(s)	93, 366, 375, 443
Tru9I	TTAA	4 cut(s)	93, 366, 375, 443
TseI	GCWGC	1 cut(s)	300
TspDTI	ATGAA	7 cut(s)	17, 64, 169, 194, 510, 516, 517
Van91I	CCANNNNNTGG	1 cut(s)	480
VneI	GTGCAC	1 cut(s)	280
XapI	RAATTY	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	387
ZrmI	AGTACT	1 cut(s)	382
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.