Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0018576

Physical Location & Seq

Genomic Coordinates Reverse (-)

1714210 .. 1714647

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG025700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCAATGATGCATCATTACATACGTGCTGATGTGATTAAACTTCACGATGTAAAGGCTCTCGCATGTCTCACTGATATCAAGTGCCGTAAGTTAGATAATCCGAACGGATTTGAGCTTGCCTTCATCTTTGATCCTGAAAGGAATCTTCATTTCAAAAATCCAGTCCTGACTAAAACATTTTACGGCGAAATGGAGAGGACAATTGGGACAGAGATCAAGTGGTGCACACCACTCGACAGAGAGTATAAGATTAGAGAAAGTTTCTTCAACTTGTTTAACAGTACTCCCGGAATTGATGAACCGCTATACGAAGGTGCGATTGCACAAGATTATGCAATTGGCTTAACAATTCGAGACAAAATTATTCCTCATGCCATATCATGGTACAATGGGGATGAATATGAAGATGGCAAGAATGAGCTTAAGTTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

145

Amino Acids

16.9

Weight (kDa)

5.52

Isoelectric Point (pI)

25.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	2 - 76	1.3e-13	Nucleosome assembly protein (NAP)
NAP	PF00956	86 - 133	7.8e-09	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018576)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087311 RchiOBHm_Chr7g0219731
rosa_laevigata	RLG00000002274
rosa_multiflora	Rmu_sc0041444.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153860
rosa_rugosa	Rorug07G0187100
rosa_samantha	Rh2BG025700 Rh7AG331100 Rh7CG348500 Rh7DG326600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	384
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	1 cut(s)	128
AfaI	GTAC	2 cut(s)	286, 389
AfiI	CCNNNNNNNGG	1 cut(s)	384
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	157, 271
AluBI	AGCT	2 cut(s)	118, 424
AluI	AGCT	2 cut(s)	118, 424
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	2 cut(s)	74, 351
Alw44I	GTGCAC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	128
ApaLI	GTGCAC	1 cut(s)	226
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AsuC2I	CCSGG	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	230
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	2 cut(s)	72, 202
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	74, 351
BfrI	CTTAAG	1 cut(s)	425
BmcAI	AGTACT	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	22
BpuMI	CCSGG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmAI	GTCTC	2 cut(s)	74, 351
BsmFI	GGGAC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	133, 216
BspACI	CCGC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	128
BspTI	CTTAAG	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	164
BssMI	GATC	2 cut(s)	133, 216
Bst4CI	ACNGT	1 cut(s)	284
BstAFI	CTTAAG	1 cut(s)	425
BstBAI	YACGTR	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	2 cut(s)	136, 219
BstMAI	GTCTC	2 cut(s)	74, 351
BstMBI	GATC	2 cut(s)	133, 216
BstNSI	RCATGY	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	285, 388
CviAII	CATG	3 cut(s)	66, 374, 384
CviJI	RGCY	4 cut(s)	59, 118, 345, 424
CviKI_1	RGCY	4 cut(s)	59, 118, 345, 424
CviQI	GTAC	2 cut(s)	285, 388
DpnI	GATC	2 cut(s)	135, 218
DpnII	GATC	2 cut(s)	133, 216
Eco32I	GATATC	1 cut(s)	79
EcoRV	GATATC	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	15
FaeI	CATG	3 cut(s)	69, 377, 387
FaiI	YATR	9 cut(s)	23, 67, 249, 310, 336, 375, 380, 385, 405
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	3 cut(s)	65, 373, 383
FokI	GGATG	1 cut(s)	410
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	3 cut(s)	69, 377, 387
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	291
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	4 cut(s)	47, 137, 169, 356
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	133, 308
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	4 cut(s)	13, 228, 326, 338
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	3 cut(s)	69, 377, 387
Kzo9I	GATC	2 cut(s)	133, 216
LpnPI	CCDG	4 cut(s)	150, 177, 182, 304
LweI	GCATC	1 cut(s)	22
MaeII	ACGT	1 cut(s)	25
MalI	GATC	2 cut(s)	135, 218
MboI	GATC	2 cut(s)	133, 216
MboII	GAAGA	3 cut(s)	140, 259, 419
MfeI	CAATTG	2 cut(s)	204, 339
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	6 cut(s)	204, 294, 339, 351, 363, 432
MnlI	CCTC	2 cut(s)	192, 381
Mph1103I	ATGCAT	1 cut(s)	15
MseI	TTAA	5 cut(s)	39, 279, 347, 426, 431
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	2 cut(s)	204, 339
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	2 cut(s)	133, 216
NlaIII	CATG	3 cut(s)	69, 377, 387
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	384
PfoI	TCCNGGA	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	26
RsaI	GTAC	2 cut(s)	286, 389
RsaNI	GTAC	2 cut(s)	285, 388
SaqAI	TTAA	5 cut(s)	39, 279, 347, 426, 431
Sau3AI	GATC	2 cut(s)	133, 216
ScaI	AGTACT	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	4 cut(s)	28, 120, 319, 426
SfaNI	GCATC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	6 cut(s)	204, 294, 339, 351, 363, 432
SsiI	CCGC	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	237, 355
TasI	AATT	6 cut(s)	204, 294, 339, 351, 363, 432
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	5 cut(s)	39, 279, 347, 426, 431
Tru9I	TTAA	5 cut(s)	39, 279, 347, 426, 431
TscAI	CASTG	1 cut(s)	79
TspDTI	ATGAA	5 cut(s)	115, 140, 315, 414, 420
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	384
Vha464I	CTTAAG	1 cut(s)	425
VneI	GTGCAC	1 cut(s)	226
XceI	RCATGY	1 cut(s)	69
ZrmI	AGTACT	1 cut(s)	286
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.