RchiOBHm_Chr2g0088041

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019293
Physical Location & Seq
Reverse (-)
2665604 .. 2666152
549 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 450 bp
ATGAATGCGAATTATGTGATGGTTCTTGTTATAGCCATGGCAGCAACGGGAGTACTAATGGTACACGGAGCAGAAGGTGCAGAATATGTAGTAGGAGACGACTTGGGGTGGACGATTCCTCCTCATGGCGCTGCCGATTTTGAGTCATGGGCTTCCTATCATAGCTTGACAGTCGACGATATTCTAGTGTTCAAGTTTGCAGCAGGAGAACAAGACTTGGCTTTTGTAAGCAAGGAAGATTTTCTCACTTGCAACACGGCGAATCCCTTTCATGTTTTTGACAACCAAACTACATTCAAATTTCTTTCCAAAGTCAGATTCTTTTGCACCAGCACCTTCGCCGGCAACTGCTTCAAGGGCCAAAAAGTAGTCGTTGATATGGGTCCTGCTGTGGATTCCACTGGTGATATTTCTCCTAGTCCAAGTCCAAGTTCTGCTGAAGCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

149

Amino Acids

15.94

Weight (kDa)

4.46

Isoelectric Point (pI)

23.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 37 - 121 5.3e-10 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019293)

Species Orthologous Gene IDs
malus_domestica MD11G1227000.v1.1
pyrus_communis pycom11g19960
rosa_chinensis RchiOBHm_Chr2g0088041
rosa_multiflora Rmu_sc0003275.1_g000012
rosa_roxburghii Rroxscaffold_2G00153030
rosa_rugosa Rorug01G0480400
rosa_samantha Rh2BG034300 Rh2DG034900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 174
AcsI RAATTY 1 cut(s) 299
AfaI GTAC 2 cut(s) 54, 63
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 3 cut(s) 193, 298, 355
AjuI GAANNNNNNNTTGG 4 cut(s) 302, 334, 415, 447
AluBI AGCT 2 cut(s) 165, 443
AluI AGCT 2 cut(s) 165, 443
Alw26I GTCTC 1 cut(s) 90
AoxI GGCC 1 cut(s) 358
ApeKI GCWGC 3 cut(s) 41, 131, 200
ApoI RAATTY 1 cut(s) 299
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 2 cut(s) 358, 383
AsuHPI GGTGA 1 cut(s) 416
AvaII GGWCC 1 cut(s) 383
BbvI GCAGC 3 cut(s) 53, 118, 212
BccI CCATC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 2 cut(s) 185, 417
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 3 cut(s) 42, 132, 201
BlsI GCNGC 3 cut(s) 43, 133, 202
BmcAI AGTACT 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 383
BmgT120I GGNCC 2 cut(s) 358, 383
BmiI GGNNCC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 406
BseDI CCNNGG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 406
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 3 cut(s) 53, 118, 212
BsgI GTGCAG 1 cut(s) 99
BshFI GGCC 1 cut(s) 360
BsiSI CCGG 1 cut(s) 342
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 90
BsmBI CGTCTC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 360
Bsp19I CCATGG 1 cut(s) 36
BspANI GGCC 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 384
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 1 cut(s) 406
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 172
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 343
BstDSI CCRYGG 1 cut(s) 36
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 41, 77, 357
BstV1I GCAGC 3 cut(s) 53, 118, 212
BsuRI GGCC 1 cut(s) 360
BtgI CCRYGG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 343
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 2 cut(s) 358, 383
Csp6I GTAC 2 cut(s) 53, 62
CviAII CATG 4 cut(s) 37, 125, 147, 272
CviJI RGCY 6 cut(s) 35, 152, 165, 221, 360, 443
CviKI_1 RGCY 6 cut(s) 35, 152, 165, 221, 360, 443
CviQI GTAC 2 cut(s) 53, 62
Eco130I CCWWGG 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 383
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 4 cut(s) 40, 128, 150, 275
FaiI YATR 9 cut(s) 15, 32, 38, 87, 126, 148, 162, 273, 380
FatI CATG 4 cut(s) 36, 124, 146, 271
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 42, 132, 201
Fsp4HI GCNGC 3 cut(s) 42, 132, 201
FspBI CTAG 2 cut(s) 185, 417
GlaI GCGC 1 cut(s) 130
GluI GCNGC 3 cut(s) 42, 132, 201
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 1 cut(s) 360
HapII CCGG 1 cut(s) 342
HhaI GCGC 1 cut(s) 131
Hin1II CATG 4 cut(s) 40, 128, 150, 275
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 5 cut(s) 115, 143, 262, 318, 395
HpaII CCGG 1 cut(s) 342
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 3 cut(s) 64, 111, 175
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 1 cut(s) 447
Hpy8I GTNNAC 3 cut(s) 64, 111, 175
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 68, 346
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 4 cut(s) 80, 200, 252, 327
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 77, 357
Hsp92II CATG 4 cut(s) 40, 128, 150, 275
HspAI GCGC 1 cut(s) 129
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 5 cut(s) 189, 343, 355, 387, 399
Lsp1109I GCAGC 3 cut(s) 53, 118, 212
MaeI CTAG 2 cut(s) 185, 417
MboII GAAGA 1 cut(s) 248
MluCI AATT 2 cut(s) 10, 299
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 2 cut(s) 129, 132
MroNI GCCGGC 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 240
MspI CCGG 1 cut(s) 342
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 3 cut(s) 41, 77, 357
NaeI GCCGGC 1 cut(s) 343
NcoI CCATGG 1 cut(s) 36
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 4 cut(s) 40, 128, 150, 275
NlaIV GGNNCC 1 cut(s) 384
PctI GAATGC 1 cut(s) 10
PdiI GCCGGC 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 4 cut(s) 115, 262, 318, 395
PkrI GCNGC 3 cut(s) 43, 133, 202
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PpuMI RGGWCCY 1 cut(s) 383
Psp5II RGGWCCY 1 cut(s) 383
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 2 cut(s) 358, 383
PspPPI RGGWCCY 1 cut(s) 383
RsaI GTAC 2 cut(s) 54, 63
RsaNI GTAC 2 cut(s) 53, 62
SalI GTCGAC 1 cut(s) 173
SatI GCNGC 3 cut(s) 42, 132, 201
Sau96I GGNCC 2 cut(s) 358, 383
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 1 cut(s) 152
SetI ASST 4 cut(s) 79, 167, 338, 445
SinI GGWCC 1 cut(s) 383
Sse9I AATT 2 cut(s) 10, 299
SspMI CTAG 2 cut(s) 185, 417
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 174
TasI AATT 2 cut(s) 10, 299
TatI WGTACW 1 cut(s) 52
TfiI GAWTC 4 cut(s) 115, 262, 318, 395
TscAI CASTG 1 cut(s) 406
TseI GCWGC 3 cut(s) 41, 131, 200
TspDTI ATGAA 2 cut(s) 17, 260
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 383
XapI RAATTY 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 2 cut(s) 185, 417
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.