RchiOBHm_Chr2g0090011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017045
Physical Location & Seq
Forward (+)
4029910 .. 4031519
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
ATGGCCTACTCTAAAGTCGTCTCTAGGTTATCCTCCCGATTACACCCGTCCTTCACTCACAAGCTCACCAAAACGACGTCGTCCGAACTCTCTTCCCTCAAATCGAGCCTTCACTTTCCGGCACCCGCTCCCGTCCGACGCATTTCCAGGTTACCATTGGAACTGAGCAGCGTGGAGTCGATGATGCCATTGCATAGTGCAATTGCTTCGGCGCGGTTAACATCGAGCTTGTCAATTGAGTCCCAGAGCTGGGGGTTAGTTCCTCAAGGAATTTCAATGCCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.32

Weight (kDa)

10.96

Isoelectric Point (pI)

78.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55205 AT1G55205 AT3G13674
fragaria_vesca FvH4_1g04361
malus_domestica MD02G1043400.v1.1 MD15G1182000.v1.1
prunus_persica Prupe.7G233600_v2.0.a1
pyrus_communis pycom02g03610 pycom15g16430
rosa_chinensis RchiOBHm_Chr2g0090011
rosa_samantha Rh2BG048600 Rh2CG050800
rosa_wichuraiana Rw2G004060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 121
AccBSI CCGCTC 1 cut(s) 128
AccII CGCG 1 cut(s) 214
AciI CCGC 2 cut(s) 126, 214
AcsI RAATTY 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 77
AfiI CCNNNNNNNGG 2 cut(s) 249, 250
AgsI TTSAA 1 cut(s) 276
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 3 cut(s) 64, 228, 249
AluI AGCT 3 cut(s) 64, 228, 249
Alw26I GTCTC 1 cut(s) 25
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 270
AspLEI GCGC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 58
BanI GGYRCC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 180
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BciT130I CCWGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 77
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 250
Bse3DI GCAATG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 249, 250
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 180
BseYI CCCAGC 1 cut(s) 249
Bsh1236I CGCG 1 cut(s) 214
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 121
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 2 cut(s) 249, 250
BsmAI GTCTC 1 cut(s) 25
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 1 cut(s) 5
BspACI CCGC 2 cut(s) 126, 214
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 156
BspFNI CGCG 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 121
BsrBI CCGCTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 188
BssNI GRCGYC 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 164
BstEII GGTNACC 1 cut(s) 150
BstFNI CGCG 1 cut(s) 214
BstHHI GCGC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 148
BstPI GGTNACC 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 146
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 5
CfoI GCGC 1 cut(s) 214
CseI GACGC 1 cut(s) 147
CviJI RGCY 5 cut(s) 5, 64, 108, 228, 249
CviKI_1 RGCY 5 cut(s) 5, 64, 108, 228, 249
DdeI CTNAG 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco91I GGTNACC 1 cut(s) 150
EcoO65I GGTNACC 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 25
FaiI YATR 2 cut(s) 195, 286
FaqI GGGAC 1 cut(s) 226
FauI CCCGC 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 169
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 169
GsaI CCCAGC 1 cut(s) 253
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 119
HgaI GACGC 1 cut(s) 147
HhaI GCGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 77
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HinfI GANTC 2 cut(s) 176, 239
HpaI GTTAAC 1 cut(s) 219
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 2 cut(s) 85, 137
Hpy188III TCNNGA 1 cut(s) 36
Hpy8I GTNNAC 1 cut(s) 219
Hpy99I CGWCG 3 cut(s) 79, 82, 141
HpyAV CCTTC 2 cut(s) 61, 119
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 2 cut(s) 193, 200
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 77
Hsp92I GRCGYC 1 cut(s) 77
HspAI GCGC 1 cut(s) 212
KspAI GTTAAC 1 cut(s) 219
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 5 cut(s) 132, 133, 160, 235, 257
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 150
MbiI CCGCTC 1 cut(s) 128
MboII GAAGA 1 cut(s) 84
MfeI CAATTG 2 cut(s) 201, 234
MluCI AATT 3 cut(s) 201, 234, 270
MlyI GAGTC 2 cut(s) 185, 248
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 3 cut(s) 43, 107, 273
MseI TTAA 1 cut(s) 218
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 148
MunI CAATTG 2 cut(s) 201, 234
MvaI CCWGG 1 cut(s) 148
MvnI CGCG 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 123
PflFI GACNNNGTC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 170
PleI GAGTC 2 cut(s) 184, 247
PpsI GAGTC 2 cut(s) 184, 247
Psp6I CCWGG 1 cut(s) 146
PspEI GGTNACC 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 249
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 123
PsyI GACNNNGTC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 1 cut(s) 169
SchI GAGTC 2 cut(s) 185, 248
ScrFI CCNGG 1 cut(s) 148
SetI ASST 6 cut(s) 29, 66, 80, 152, 230, 251
SfaNI GCATC 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 3 cut(s) 201, 234, 270
SsiI CCGC 2 cut(s) 126, 214
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 146
TaiI ACGT 1 cut(s) 80
TaqI TCGA 3 cut(s) 104, 179, 224
TasI AATT 3 cut(s) 201, 234, 270
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TseI GCWGC 1 cut(s) 168
Tth111I GACNNNGTC 1 cut(s) 79
XapI RAATTY 1 cut(s) 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XspI CTAG 1 cut(s) 24
ZraI GACGTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.