RchiOBHm_Chr2g0090651

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017881
Physical Location & Seq
Forward (+)
4410270 .. 4411037
768 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 189 bp
ATGAACTCCTTCAGACCTTGCTGCGCTCTCCCAATTATTGGGTTCATGTTCATGGCCCTGTTGAGCCTCAGCTATGGTCAAGAAGCCGCCCCAGCTCCTTCTCCGACCAGCGATGGTGCGGCTATAGATCAAGGAATTGCTTACATCCTTTTGGTGCTGGCTTTGGCGATGACATATCTATTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

62

Amino Acids

6.56

Weight (kDa)

4.54

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 30 - 62 2e-16 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46330 AT2G46330 AT3G61640
fragaria_vesca FvH4_1g05040
malus_domestica MD02G1048700.v1.1 MD15G1187000.v1.1
prunus_persica Prupe.7G229500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0090651
rosa_multiflora Rmu_sc0003952.1_g000006 Rmu_sc0016852.1_g000009
rosa_roxburghii Rroxscaffold_2G00150910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 38
AciI CCGC 2 cut(s) 87, 119
AfiI CCNNNNNNNGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 72, 95
AluI AGCT 2 cut(s) 72, 95
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 21
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 55
BbvCI CCTCAGC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 8
BccI CCATC 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 3 cut(s) 22, 87, 120
BlsI GCNGC 3 cut(s) 23, 88, 121
BmgT120I GGNCC 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 38
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMII CTCAG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 8
BseYI CCCAGC 1 cut(s) 91
BshFI GGCC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 38
BsnI GGCC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 2 cut(s) 87, 119
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 81
BssMI GATC 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 8
BsuRI GGCC 1 cut(s) 56
BtgZI GCGATG 2 cut(s) 126, 182
BtsCI GGATG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 55
CviAII CATG 2 cut(s) 46, 52
CviJI RGCY 7 cut(s) 56, 66, 72, 86, 95, 122, 161
CviKI_1 RGCY 7 cut(s) 56, 66, 72, 86, 95, 122, 161
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
FaeI CATG 2 cut(s) 49, 55
FaiI YATR 5 cut(s) 47, 53, 75, 125, 175
FatI CATG 2 cut(s) 45, 51
Fnu4HI GCNGC 3 cut(s) 22, 87, 120
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 3 cut(s) 22, 87, 120
GlaI GCGC 1 cut(s) 25
GluI GCNGC 3 cut(s) 22, 87, 120
GsaI CCCAGC 1 cut(s) 95
HaeIII GGCC 1 cut(s) 56
HhaI GCGC 1 cut(s) 26
Hin1II CATG 2 cut(s) 49, 55
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
Hpy188I TCNGA 2 cut(s) 14, 105
Hpy188III TCNNGA 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 19, 108
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 68
Hsp92II CATG 2 cut(s) 49, 55
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 4 cut(s) 71, 105, 121, 143
Lsp1109I GCAGC 1 cut(s) 8
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MluCI AATT 2 cut(s) 33, 135
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 1 cut(s) 77
MroXI GAANNNNTTC 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 1 cut(s) 127
NlaIII CATG 2 cut(s) 49, 55
PdmI GAANNNNTTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 38
PkrI GCNGC 3 cut(s) 23, 88, 121
PspFI CCCAGC 1 cut(s) 91
PspPI GGNCC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 50
SatI GCNGC 3 cut(s) 22, 87, 120
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 55
SetI ASST 3 cut(s) 19, 74, 97
SfcI CTRYAG 1 cut(s) 123
SgeI CNNG 9 cut(s) 30, 58, 64, 70, 92, 104, 120, 143, 170
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 2 cut(s) 33, 135
SsiI CCGC 2 cut(s) 87, 119
TasI AATT 2 cut(s) 33, 135
TauI GCSGC 2 cut(s) 89, 122
TseI GCWGC 1 cut(s) 21
TspDTI ATGAA 3 cut(s) 17, 34, 40
Van91I CCANNNNNTGG 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.