RchiOBHm_Chr2g0098171

Ganglioside-induced differentiation-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015291
Physical Location & Seq
Reverse (-)
10615365 .. 10616594
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 615 bp
ATGAGCACCACCGCTCAACTCTCCGATTCCGAGCAGCGTGCCCTCGTCGAAAAGCTCCACGTCTTCAAGATCAAAGGCCGCGACAAACGCGGCCGCACCATCCTTCGCGTCATCGGAAAATTCTTTCCAGCTCGGATTGTGAGCGTGGATAATCTGAGGAAGTATCTGGAAGAGAAGATATTCCCGGAATTGGAGAACAAGCCGTTCGCGGTGGTGTACGTCCACACCGGAGTTCAGAGGTCCGAGAATTTCCCCGGAATCTCGGCCCTCCGATCAATCTACGACGCGATCCCGATCAACGTCAAGCGGAATCTCGAGGCCGTCTATTTCCTTCACCCAGGTCTCCAGGCCCGGCTCTTCTTGGCCACCTTCGGCCGTTTCCTTTTCACCGGAGGGGTGTATGGGAAGCTGAAGTACGTCAGCAGGCTCGATTATCTGTGGGAGCACGTGAGGAGGAGCGAGATCGACGTCCCTGATTTCGTTTATGATCACGATGAGGACTTGGAGCACCGTCCGATGATGGACTATGGATTGGAGAGTGATCACCCGAGGGTGTATGATGCACCCGCGGTGGATTCCTCTGTGTCTATGTACTCCATGAGGTGCATCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO_2

Protein Analysis

204

Amino Acids

23.65

Weight (kDa)

8.56

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_2 PF13716 31 - 167 3.6e-39 Divergent CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015291)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35750
fragaria_vesca FvH4_1g10910
malus_domestica MD02G1122200.v1.1 MD15G1236100.v1.1
prunus_persica Prupe.7G176400_v2.0.a1
pyrus_communis pycom02g09510 pycom15g21010
rosa_chinensis RchiOBHm_Chr2g0098171
rosa_laevigata RLG00000016768
rosa_multiflora Rmu_sc0009178.1_g000010
rosa_roxburghii Rroxscaffold_2G00144230
rosa_rugosa Rorug02G0070700
rosa_samantha Rh2BG121000 Rh2CG122600 Rh2DG122500
rosa_wichuraiana Rw2G009230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 471
AccBSI CCGCTC 1 cut(s) 14
AccII CGCG 6 cut(s) 81, 90, 108, 209, 287, 569
AciI CCGC 8 cut(s) 12, 79, 90, 94, 209, 307, 567, 569
AclWI GGATC 1 cut(s) 283
AcoI YGGCCR 3 cut(s) 91, 363, 373
AcsI RAATTY 2 cut(s) 119, 247
AcuI CTGAAG 1 cut(s) 431
AcvI CACGTG 1 cut(s) 448
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 3 cut(s) 218, 416, 593
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 1 cut(s) 67
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 2 cut(s) 337, 345
AluBI AGCT 3 cut(s) 55, 131, 409
AluI AGCT 3 cut(s) 55, 131, 409
Alw21I GWGCWC 3 cut(s) 8, 447, 510
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 1 cut(s) 283
Ama87I CYCGRG 2 cut(s) 314, 547
AoxI GGCC 7 cut(s) 76, 91, 264, 318, 348, 363, 373
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 2 cut(s) 119, 247
Asp700I GAANNNNTTC 1 cut(s) 179
AspS9I GGNCC 3 cut(s) 240, 265, 349
AsuC2I CCSGG 3 cut(s) 185, 255, 352
AsuHPI GGTGA 3 cut(s) 326, 379, 536
AvaI CYCGRG 2 cut(s) 314, 547
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 43
BalI TGGCCA 1 cut(s) 365
BarI GAAGNNNNNNTAC 2 cut(s) 398, 430
BbrPI CACGTG 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 55
Bbv12I GWGCWC 3 cut(s) 8, 447, 510
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 107, 514
BceAI ACGGC 3 cut(s) 187, 305, 360
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BciT130I CCWGG 2 cut(s) 339, 347
BclI TGATCA 2 cut(s) 487, 541
BcnI CCSGG 3 cut(s) 185, 255, 352
BcoDI GTCTC 1 cut(s) 347
BisI GCNGC 4 cut(s) 35, 79, 91, 94
BlsI GCNGC 4 cut(s) 36, 80, 92, 95
Bme1390I CCNGG 5 cut(s) 185, 255, 339, 347, 352
Bme18I GGWCC 1 cut(s) 240
BmeT110I CYCGRG 2 cut(s) 314, 547
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 3 cut(s) 240, 265, 349
BmrFI CCNGG 5 cut(s) 185, 255, 339, 347, 352
BmsI GCATC 1 cut(s) 550
BpiI GAAGAC 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 329
BpuMI CCSGG 3 cut(s) 185, 255, 352
BsaAI YACGTR 1 cut(s) 448
BsaBI GATNNNNATC 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 4 cut(s) 253, 337, 548, 567
BsaWI WCCGGW 2 cut(s) 227, 389
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse8I GATNNNNATC 1 cut(s) 293
BseBI CCWGG 2 cut(s) 339, 347
BseDI CCNNGG 4 cut(s) 253, 337, 548, 567
BseGI GGATG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 293
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 146
BseRI GAGGAG 2 cut(s) 466, 469
BseSI GKGCMC 1 cut(s) 43
BseX3I CGGCCG 2 cut(s) 91, 373
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 6 cut(s) 81, 90, 108, 209, 287, 569
Bsh1285I CGRYCG 2 cut(s) 94, 376
BshFI GGCC 7 cut(s) 78, 93, 266, 320, 350, 365, 375
BsiEI CGRYCG 2 cut(s) 94, 376
BsiHKAI GWGCWC 3 cut(s) 8, 447, 510
BsiHKCI CYCGRG 2 cut(s) 314, 547
BsiSI CCGG 5 cut(s) 185, 228, 255, 352, 390
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 7 cut(s) 78, 93, 266, 320, 350, 365, 375
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 2 cut(s) 314, 547
Bsp1286I GDGCHC 4 cut(s) 8, 43, 447, 510
Bsp143I GATC 7 cut(s) 69, 272, 288, 294, 462, 487, 541
BspACI CCGC 8 cut(s) 12, 79, 90, 94, 209, 307, 567, 569
BspANI GGCC 7 cut(s) 78, 93, 266, 320, 350, 365, 375
BspCNI CTCAG 1 cut(s) 147
BspFNI CGCG 6 cut(s) 81, 90, 108, 209, 287, 569
BspPI GGATC 1 cut(s) 283
BspQI GCTCTTC 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 14
BssECI CCNNGG 4 cut(s) 253, 337, 548, 567
BssMI GATC 7 cut(s) 69, 272, 288, 294, 462, 487, 541
BssNI GRCGYC 1 cut(s) 468
Bst2UI CCWGG 2 cut(s) 339, 347
Bst4CI ACNGT 1 cut(s) 512
Bst6I CTCTTC 2 cut(s) 165, 362
BstACI GRCGYC 1 cut(s) 468
BstBAI YACGTR 1 cut(s) 448
BstC8I GCNNGC 2 cut(s) 39, 425
BstDEI CTNAG 1 cut(s) 155
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 6 cut(s) 81, 90, 108, 209, 287, 569
BstKTI GATC 7 cut(s) 72, 275, 291, 297, 465, 490, 544
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 7 cut(s) 69, 272, 288, 294, 462, 487, 541
BstMCI CGRYCG 2 cut(s) 94, 376
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNI CCWGG 2 cut(s) 339, 347
BstSCI CCNGG 5 cut(s) 183, 253, 337, 345, 350
BstSLI GKGCMC 1 cut(s) 43
BstUI CGCG 6 cut(s) 81, 90, 108, 209, 287, 569
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 55
BstZI CGGCCG 2 cut(s) 91, 373
BsuRI GGCC 7 cut(s) 78, 93, 266, 320, 350, 365, 375
BtgI CCRYGG 1 cut(s) 567
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 39, 425
CciNI GCGGCCGC 1 cut(s) 91
Cfr13I GGNCC 3 cut(s) 240, 265, 349
Cfr42I CCGCGG 1 cut(s) 570
CseI GACGC 2 cut(s) 97, 293
Csp6I GTAC 3 cut(s) 217, 415, 592
CviAII CATG 1 cut(s) 598
CviQI GTAC 3 cut(s) 217, 415, 592
DdeI CTNAG 1 cut(s) 155
DpnI GATC 7 cut(s) 71, 274, 290, 296, 464, 489, 543
DpnII GATC 7 cut(s) 69, 272, 288, 294, 462, 487, 541
EaeI YGGCCR 3 cut(s) 91, 363, 373
EagI CGGCCG 2 cut(s) 91, 373
Eam1104I CTCTTC 2 cut(s) 165, 362
EarI CTCTTC 2 cut(s) 165, 362
EclXI CGGCCG 2 cut(s) 91, 373
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 240
Eco52I CGGCCG 2 cut(s) 91, 373
Eco57I CTGAAG 1 cut(s) 431
Eco72I CACGTG 1 cut(s) 448
Eco88I CYCGRG 2 cut(s) 314, 547
EcoRII CCWGG 2 cut(s) 337, 345
FaeI CATG 1 cut(s) 601
FaiI YATR 6 cut(s) 402, 486, 528, 558, 590, 599
FaqI GGGAC 1 cut(s) 455
FatI CATG 1 cut(s) 597
FauI CCCGC 1 cut(s) 574
FbaI TGATCA 2 cut(s) 487, 541
Fnu4HI GCNGC 4 cut(s) 35, 79, 91, 94
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 4 cut(s) 35, 79, 91, 94
GluI GCNGC 4 cut(s) 35, 79, 91, 94
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 7 cut(s) 78, 93, 266, 320, 350, 365, 375
HapII CCGG 5 cut(s) 185, 228, 255, 352, 390
HgaI GACGC 2 cut(s) 97, 293
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 1 cut(s) 601
HinfI GANTC 4 cut(s) 26, 258, 310, 575
HpaII CCGG 5 cut(s) 185, 228, 255, 352, 390
HphI GGTGA 3 cut(s) 326, 379, 536
Hpy166II GTNNAC 2 cut(s) 217, 223
Hpy188I TCNGA 9 cut(s) 25, 31, 116, 135, 156, 237, 244, 272, 516
Hpy188III TCNNGA 5 cut(s) 67, 167, 292, 314, 491
Hpy8I GTNNAC 2 cut(s) 217, 223
Hpy99I CGWCG 3 cut(s) 50, 287, 470
HpyAV CCTTC 3 cut(s) 113, 341, 379
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 6 cut(s) 60, 219, 300, 417, 447, 468
HpyCH4V TGCA 2 cut(s) 563, 606
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 6 cut(s) 60, 219, 300, 417, 447, 468
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 1 cut(s) 601
Ksp22I TGATCA 2 cut(s) 487, 541
KspI CCGCGG 1 cut(s) 570
Kzo9I GATC 7 cut(s) 69, 272, 288, 294, 462, 487, 541
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 4 cut(s) 60, 442, 456, 505
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 550
MaeII ACGT 6 cut(s) 60, 219, 300, 417, 447, 468
MalI GATC 7 cut(s) 71, 274, 290, 296, 464, 489, 543
MbiI CCGCTC 1 cut(s) 14
MboI GATC 7 cut(s) 69, 272, 288, 294, 462, 487, 541
MboII GAAGA 4 cut(s) 55, 182, 187, 349
MhlI GDGCHC 4 cut(s) 8, 43, 447, 510
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 3 cut(s) 119, 188, 247
MluNI TGGCCA 1 cut(s) 365
Mox20I TGGCCA 1 cut(s) 365
MroXI GAANNNNTTC 1 cut(s) 179
MscI TGGCCA 1 cut(s) 365
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 569
MspI CCGG 5 cut(s) 185, 228, 255, 352, 390
MspR9I CCNGG 5 cut(s) 185, 255, 339, 347, 352
MvaI CCWGG 2 cut(s) 339, 347
MvnI CGCG 6 cut(s) 81, 90, 108, 209, 287, 569
MwoI GCNNNNNNNGC 1 cut(s) 87
NciI CCSGG 3 cut(s) 185, 255, 352
NdeII GATC 7 cut(s) 69, 272, 288, 294, 462, 487, 541
NlaIII CATG 1 cut(s) 601
NmeAIII GCCGAG 1 cut(s) 242
NotI GCGGCCGC 1 cut(s) 91
PaeR7I CTCGAG 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 362
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 4 cut(s) 26, 258, 310, 575
PfoI TCCNGGA 1 cut(s) 183
PkrI GCNGC 4 cut(s) 36, 80, 92, 95
PmaCI CACGTG 1 cut(s) 448
PmlI CACGTG 1 cut(s) 448
Ppu21I YACGTR 1 cut(s) 448
Psp6I CCWGG 2 cut(s) 337, 345
PspCI CACGTG 1 cut(s) 448
PspGI CCWGG 2 cut(s) 337, 345
PspPI GGNCC 3 cut(s) 240, 265, 349
RsaI GTAC 3 cut(s) 218, 416, 593
RsaNI GTAC 3 cut(s) 217, 415, 592
SacII CCGCGG 1 cut(s) 570
SapI GCTCTTC 1 cut(s) 362
SatI GCNGC 4 cut(s) 35, 79, 91, 94
Sau3AI GATC 7 cut(s) 69, 272, 288, 294, 462, 487, 541
Sau96I GGNCC 3 cut(s) 240, 265, 349
ScrFI CCNGG 5 cut(s) 185, 255, 339, 347, 352
SduI GDGCHC 4 cut(s) 8, 43, 447, 510
SfaNI GCATC 1 cut(s) 550
Sfr274I CTCGAG 1 cut(s) 314
Sfr303I CCGCGG 1 cut(s) 570
SgrBI CCGCGG 1 cut(s) 570
SinI GGWCC 1 cut(s) 240
SlaI CTCGAG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 3 cut(s) 119, 188, 247
SsiI CCGC 8 cut(s) 12, 79, 90, 94, 209, 307, 567, 569
StyD4I CCNGG 5 cut(s) 183, 253, 337, 345, 350
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 6 cut(s) 63, 222, 303, 420, 450, 471
TaqI TCGA 4 cut(s) 48, 315, 429, 465
TasI AATT 3 cut(s) 119, 188, 247
TatI WGTACW 1 cut(s) 591
TauI GCSGC 3 cut(s) 81, 93, 96
TfiI GAWTC 4 cut(s) 26, 258, 310, 575
TseI GCWGC 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 2 cut(s) 119, 247
XhoI CTCGAG 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 179
ZraI GACGTC 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.