RchiOBHm_Chr2g0099961

At4g15545-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019896
Physical Location & Seq
Reverse (-)
11963649 .. 11965097
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 171 bp
ATGGTGGTGATTCCGAGCGACCCGTACGAGCAGCTGGATCTGGCGAGGAAGATCACGTCGATGGTGATGGCCGCTAGGGTTTCGAATCTCGAGGCGGAGGTCGGGAGGCTGAGGCAGAGGCTGAGCGAGAAAGATAGGGTTATTTTTTACCTCGCGGCTCCATCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.34

Weight (kDa)

7.92

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019896)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0099961
rosa_laevigata RLG00000011632
rosa_multiflora Rmu_co8036340.1_g000001 Rmu_sc0006675.1_g000006 Rmu_sc0007877.1_g000022
rosa_samantha Rh2AG133400 Rh6AG194200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 155
AciI CCGC 3 cut(s) 72, 95, 155
AclWI GGATC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 69
AfaI GTAC 1 cut(s) 26
AjiI CACGTC 1 cut(s) 57
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
AlwI GGATC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 31
AsuHPI GGTGA 2 cut(s) 19, 76
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 89
BbvCI CCTCAGC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 43
BccI CCATC 3 cut(s) 55, 61, 169
BfaI CTAG 1 cut(s) 75
BisI GCNGC 3 cut(s) 32, 72, 156
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 3 cut(s) 33, 73, 157
BmeT110I CYCGRG 1 cut(s) 89
BmgBI CACGTC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 110
Bpu1102I GCTNAGC 1 cut(s) 122
Bpu14I TTCGAA 1 cut(s) 83
BseMII CTCAG 2 cut(s) 101, 113
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 89
BsiWI CGTACG 1 cut(s) 24
BsnI GGCC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 83
Bsp143I GATC 2 cut(s) 37, 51
Bsp1720I GCTNAGC 1 cut(s) 122
BspACI CCGC 3 cut(s) 72, 95, 155
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 102, 114
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 159
BspPI GGATC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 83
BssMI GATC 2 cut(s) 37, 51
BstBI TTCGAA 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 110, 122
BstFNI CGCG 1 cut(s) 155
BstKTI GATC 2 cut(s) 40, 54
BstMBI GATC 2 cut(s) 37, 51
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 1 cut(s) 71
BtrI CACGTC 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 121
Csp6I GTAC 1 cut(s) 25
CviAII CATG 1 cut(s) 165
CviJI RGCY 5 cut(s) 34, 71, 109, 121, 158
CviKI_1 RGCY 5 cut(s) 34, 71, 109, 121, 158
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 2 cut(s) 110, 122
DpnI GATC 2 cut(s) 39, 53
DpnII GATC 2 cut(s) 37, 51
EaeI YGGCCR 1 cut(s) 69
EciI GGCGGA 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 89
FaeI CATG 1 cut(s) 168
FaiI YATR 1 cut(s) 166
FatI CATG 1 cut(s) 164
Fnu4HI GCNGC 3 cut(s) 32, 72, 156
Fsp4HI GCNGC 3 cut(s) 32, 72, 156
FspBI CTAG 1 cut(s) 75
GluI GCNGC 3 cut(s) 32, 72, 156
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 1 cut(s) 168
HinfI GANTC 2 cut(s) 10, 85
HphI GGTGA 2 cut(s) 19, 76
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 89, 103
Hpy99I CGWCG 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 110, 122
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 1 cut(s) 168
Kzo9I GATC 2 cut(s) 37, 51
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 2 cut(s) 20, 26
Lsp1109I GCAGC 1 cut(s) 43
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 56
MalI GATC 2 cut(s) 39, 53
MboI GATC 2 cut(s) 37, 51
MboII GAAGA 1 cut(s) 61
MflI RGATCY 1 cut(s) 37
MnlI CCTC 7 cut(s) 39, 85, 91, 99, 105, 111, 161
MseI TTAA 1 cut(s) 169
MslI CAYNNNNRTG 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 34
MvnI CGCG 1 cut(s) 155
NdeII GATC 2 cut(s) 37, 51
NlaIII CATG 1 cut(s) 168
NlaIV GGNNCC 1 cut(s) 159
NspV TTCGAA 1 cut(s) 83
PaeR7I CTCGAG 1 cut(s) 89
PfeI GAWTC 2 cut(s) 10, 85
Pfl23II CGTACG 1 cut(s) 24
PkrI GCNGC 3 cut(s) 33, 73, 157
PspLI CGTACG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 159
PstNI CAGNNNCTG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 169
SatI GCNGC 3 cut(s) 32, 72, 156
Sau3AI GATC 2 cut(s) 37, 51
SetI ASST 4 cut(s) 36, 59, 102, 153
Sfr274I CTCGAG 1 cut(s) 89
SfuI TTCGAA 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SsiI CCGC 3 cut(s) 72, 95, 155
SspMI CTAG 1 cut(s) 75
TaiI ACGT 1 cut(s) 59
TaqI TCGA 3 cut(s) 59, 83, 90
TauI GCSGC 2 cut(s) 74, 158
TfiI GAWTC 2 cut(s) 10, 85
Tru1I TTAA 1 cut(s) 169
Tru9I TTAA 1 cut(s) 169
TseI GCWGC 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 89
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.