Rmu_co8036340.1_g000001

At4g15545-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8036340.1
OG0019896
Physical Location & Seq
Reverse (-)
34 .. 538
505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8036340.1_g000001.1.cds

Sequence Viewer

Length: 339 bp
atggtggtgattccgagcgacccgtacgagcagctggatctggcgaggaagatcatgtcgatggcaatacccgctagggtttcgaatctcgaggctgaggtcgggaggctaaggcagaagctgagcgagaaagataggacgcggggtggactgctgcaggcatggggtgggctgctgcaggggaggaggatgcgcaggggaaaagacaagtatgggttggcagctaagcagcaagggctgggcggtggtgggatgtgcgtgcagaggctaggttccggttcgagttttcgtagctgcttggattggggtgtggaagatctcgcgagtgtgaggatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.26

Weight (kDa)

10.2

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019896)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0099961
rosa_laevigata RLG00000011632
rosa_multiflora Rmu_co8036340.1_g000001 Rmu_sc0006675.1_g000006 Rmu_sc0007877.1_g000022
rosa_samantha Rh2AG133400 Rh6AG194200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 194
AccII CGCG 2 cut(s) 142, 323
AciI CCGC 3 cut(s) 72, 142, 243
AclWI GGATC 1 cut(s) 45
AfaI GTAC 1 cut(s) 26
AluBI AGCT 4 cut(s) 34, 121, 224, 294
AluI AGCT 4 cut(s) 34, 121, 224, 294
AlwI GGATC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 89
ApeKI GCWGC 7 cut(s) 31, 154, 172, 175, 221, 229, 294
AspLEI GCGC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 19
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 89
BbvCI CCTCAGC 1 cut(s) 96
BbvI GCAGC 7 cut(s) 43, 141, 159, 162, 233, 241, 281
BccI CCATC 1 cut(s) 55
BfaI CTAG 2 cut(s) 75, 269
BfmI CTRYAG 2 cut(s) 155, 176
BglII AGATCT 1 cut(s) 316
BisI GCNGC 7 cut(s) 32, 155, 173, 176, 222, 230, 295
BlpI GCTNAGC 2 cut(s) 122, 225
BlsI GCNGC 7 cut(s) 33, 156, 174, 177, 223, 231, 296
BmeT110I CYCGRG 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 274
BmsI GCATC 1 cut(s) 180
Bpu10I CCTNAGC 2 cut(s) 96, 110
Bpu1102I GCTNAGC 2 cut(s) 122, 225
Bpu14I TTCGAA 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 275
BseGI GGATG 2 cut(s) 195, 258
BseMII CTCAG 2 cut(s) 87, 113
BseRI GAGGAG 1 cut(s) 199
BseXI GCAGC 7 cut(s) 43, 141, 159, 162, 233, 241, 281
BseYI CCCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 281
Bsh1236I CGCG 2 cut(s) 142, 323
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 276
BsiWI CGTACG 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 83
Bsp143I GATC 4 cut(s) 37, 51, 316, 333
Bsp1720I GCTNAGC 2 cut(s) 122, 225
Bsp68I TCGCGA 1 cut(s) 323
BspACI CCGC 3 cut(s) 72, 142, 243
BspCNI CTCAG 2 cut(s) 88, 114
BspFNI CGCG 2 cut(s) 142, 323
BspLI GGNNCC 1 cut(s) 274
BspMAI CTGCAG 2 cut(s) 159, 180
BspPI GGATC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 83
BssMI GATC 4 cut(s) 37, 51, 316, 333
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 159, 260
BstDEI CTNAG 4 cut(s) 96, 110, 122, 225
BstF5I GGATG 2 cut(s) 195, 258
BstFNI CGCG 2 cut(s) 142, 323
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 4 cut(s) 40, 54, 319, 336
BstMBI GATC 4 cut(s) 37, 51, 316, 333
BstMWI GCNNNNNNNGC 2 cut(s) 71, 235
BstSFI CTRYAG 2 cut(s) 155, 176
BstUI CGCG 2 cut(s) 142, 323
BstV1I GCAGC 7 cut(s) 43, 141, 159, 162, 233, 241, 281
BstX2I RGATCY 3 cut(s) 37, 316, 333
BstYI RGATCY 3 cut(s) 37, 316, 333
BtsCI GGATG 2 cut(s) 195, 258
BtuMI TCGCGA 1 cut(s) 323
Cac8I GCNNGC 2 cut(s) 159, 260
CaiI CAGNNNCTG 1 cut(s) 121
CfoI GCGC 1 cut(s) 195
CseI GACGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 25
CviAII CATG 2 cut(s) 55, 162
CviJI RGCY 9 cut(s) 34, 95, 109, 121, 172, 224, 238, 268, 294
CviKI_1 RGCY 9 cut(s) 34, 95, 109, 121, 172, 224, 238, 268, 294
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 4 cut(s) 96, 110, 122, 225
DpnI GATC 4 cut(s) 39, 53, 318, 335
DpnII GATC 4 cut(s) 37, 51, 316, 333
Eco88I CYCGRG 1 cut(s) 89
FaeI CATG 2 cut(s) 58, 165
FaiI YATR 3 cut(s) 56, 163, 213
FatI CATG 2 cut(s) 54, 161
FauI CCCGC 2 cut(s) 79, 135
Fnu4HI GCNGC 7 cut(s) 32, 155, 173, 176, 222, 230, 295
FokI GGATG 2 cut(s) 202, 265
Fsp4HI GCNGC 7 cut(s) 32, 155, 173, 176, 222, 230, 295
FspBI CTAG 2 cut(s) 75, 269
FspI TGCGCA 1 cut(s) 194
GlaI GCGC 1 cut(s) 194
GluI GCNGC 7 cut(s) 32, 155, 173, 176, 222, 230, 295
GsaI CCCAGC 1 cut(s) 242
HapII CCGG 1 cut(s) 276
HgaI GACGC 1 cut(s) 148
HhaI GCGC 1 cut(s) 195
Hin1II CATG 2 cut(s) 58, 165
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 2 cut(s) 10, 85
HpaII CCGG 1 cut(s) 276
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 2 cut(s) 15, 338
Hpy188III TCNNGA 3 cut(s) 89, 103, 322
Hpy8I GTNNAC 1 cut(s) 149
HpyCH4V TGCA 3 cut(s) 157, 178, 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 235
HpyF3I CTNAG 4 cut(s) 96, 110, 122, 225
Hsp92II CATG 2 cut(s) 58, 165
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 4 cut(s) 37, 51, 316, 333
LpnPI CCDG 7 cut(s) 20, 26, 143, 164, 181, 224, 289
Lsp1109I GCAGC 7 cut(s) 43, 141, 159, 162, 233, 241, 281
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 75, 269
MalI GATC 4 cut(s) 39, 53, 318, 335
MboI GATC 4 cut(s) 37, 51, 316, 333
MboII GAAGA 2 cut(s) 61, 326
MflI RGATCY 3 cut(s) 37, 316, 333
MnlI CCTC 8 cut(s) 39, 85, 91, 99, 177, 180, 258, 324
MslI CAYNNNNRTG 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 1 cut(s) 276
MvnI CGCG 2 cut(s) 142, 323
MwoI GCNNNNNNNGC 2 cut(s) 71, 235
NdeII GATC 4 cut(s) 37, 51, 316, 333
NlaIII CATG 2 cut(s) 58, 165
NlaIV GGNNCC 1 cut(s) 274
NruI TCGCGA 1 cut(s) 323
NsbI TGCGCA 1 cut(s) 194
NspV TTCGAA 1 cut(s) 83
PaeR7I CTCGAG 1 cut(s) 89
PfeI GAWTC 2 cut(s) 10, 85
Pfl23II CGTACG 1 cut(s) 24
PkrI GCNGC 7 cut(s) 33, 156, 174, 177, 223, 231, 296
PspFI CCCAGC 1 cut(s) 238
PspLI CGTACG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 274
PstI CTGCAG 2 cut(s) 159, 180
PstNI CAGNNNCTG 1 cut(s) 121
PsuI RGATCY 3 cut(s) 37, 316, 333
PvuII CAGCTG 1 cut(s) 34
RruI TCGCGA 1 cut(s) 323
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 59
SatI GCNGC 7 cut(s) 32, 155, 173, 176, 222, 230, 295
Sau3AI GATC 4 cut(s) 37, 51, 316, 333
SetI ASST 6 cut(s) 36, 102, 123, 226, 274, 296
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 2 cut(s) 155, 176
Sfr274I CTCGAG 1 cut(s) 89
SfuI TTCGAA 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SsiI CCGC 3 cut(s) 72, 142, 243
SspMI CTAG 2 cut(s) 75, 269
TaqI TCGA 4 cut(s) 59, 83, 90, 281
TfiI GAWTC 2 cut(s) 10, 85
TseI GCWGC 7 cut(s) 31, 154, 172, 175, 221, 229, 294
XhoI CTCGAG 1 cut(s) 89
XspI CTAG 2 cut(s) 75, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.