Rmu_sc0007877.1_g000022

At4g15545-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007877.1
OG0019896
Physical Location & Seq
Forward (+)
88681 .. 89199
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007877.1_g000022.1.cds

Sequence Viewer

Length: 405 bp
atggtggtgattccgagcgacccgtacgagcagctggatctggcgaggaagatcacgtcgatggtgatagccgctagggtttcgaatcttgaggcggaggtcgggaggcagaggcagaagctaagcgagaaagatagggttatttttgacctcgaggaaagagccttgaggctccagcatgttaaccatgacgccgacgtaacccgaattactgtagatgcgggtggactgctgcaagggaggaggatgcgcaggccagttgtgtgcaggggaaaaggccagtatgggttggcagcaaagcagcaagggttgcaagctgggttccggtttgagttttcgaagctacttggattggggtgtggaagatctcgcgagtgtgaggatatgaggtttgtgatgatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.17

Weight (kDa)

9.65

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019896)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0099961
rosa_laevigata RLG00000011632
rosa_multiflora Rmu_co8036340.1_g000001 Rmu_sc0006675.1_g000006 Rmu_sc0007877.1_g000022
rosa_samantha Rh2AG133400 Rh6AG194200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 152
Acc16I TGCGCA 1 cut(s) 251
AccII CGCG 1 cut(s) 372
AciI CCGC 3 cut(s) 72, 95, 221
AclWI GGATC 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 26
AjiI CACGTC 1 cut(s) 57
AluBI AGCT 4 cut(s) 34, 121, 317, 343
AluI AGCT 4 cut(s) 34, 121, 317, 343
AlwI GGATC 1 cut(s) 45
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 2 cut(s) 254, 277
ApeKI GCWGC 4 cut(s) 31, 232, 293, 301
AspLEI GCGC 1 cut(s) 252
AsuHPI GGTGA 2 cut(s) 19, 76
AsuII TTCGAA 2 cut(s) 83, 338
AvaI CYCGRG 1 cut(s) 152
BbvI GCAGC 4 cut(s) 43, 219, 305, 313
BccI CCATC 1 cut(s) 55
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 213
BglII AGATCT 1 cut(s) 365
BisI GCNGC 5 cut(s) 32, 72, 233, 294, 302
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 5 cut(s) 33, 73, 234, 295, 303
BmeT110I CYCGRG 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 173, 323
BmsI GCATC 2 cut(s) 208, 237
BpmI CTGGAG 1 cut(s) 158
Bpu1102I GCTNAGC 1 cut(s) 122
Bpu14I TTCGAA 2 cut(s) 83, 338
BpuEI CTTGAG 2 cut(s) 110, 187
BsaHI GRCGYC 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 324
Bse1I ACTGG 2 cut(s) 257, 280
BseGI GGATG 1 cut(s) 252
BseNI ACTGG 2 cut(s) 257, 280
BseRI GAGGAG 1 cut(s) 256
BseXI GCAGC 4 cut(s) 43, 219, 305, 313
BseYI CCCAGC 1 cut(s) 317
BsgI GTGCAG 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 2 cut(s) 256, 279
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 325
BsiWI CGTACG 1 cut(s) 24
BsnI GGCC 2 cut(s) 256, 279
BsoBI CYCGRG 1 cut(s) 152
Bsp119I TTCGAA 2 cut(s) 83, 338
Bsp143I GATC 3 cut(s) 37, 51, 365
Bsp1720I GCTNAGC 1 cut(s) 122
Bsp68I TCGCGA 1 cut(s) 372
BspACI CCGC 3 cut(s) 72, 95, 221
BspANI GGCC 2 cut(s) 256, 279
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 2 cut(s) 173, 323
BspPI GGATC 1 cut(s) 45
BspT104I TTCGAA 2 cut(s) 83, 338
BsrI ACTGG 2 cut(s) 257, 280
BssMI GATC 3 cut(s) 37, 51, 365
BssNI GRCGYC 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 192
BstAPI GCANNNNNTGC 1 cut(s) 310
BstBI TTCGAA 2 cut(s) 83, 338
BstC8I GCNNGC 2 cut(s) 254, 315
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 252
BstFNI CGCG 1 cut(s) 372
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 3 cut(s) 40, 54, 368
BstMBI GATC 3 cut(s) 37, 51, 365
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstNSI RCATGY 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 213
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 4 cut(s) 43, 219, 305, 313
BstX2I RGATCY 2 cut(s) 37, 365
BstYI RGATCY 2 cut(s) 37, 365
BsuRI GGCC 2 cut(s) 256, 279
BtrI CACGTC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 252
BtuMI TCGCGA 1 cut(s) 372
Cac8I GCNNGC 2 cut(s) 254, 315
CfoI GCGC 1 cut(s) 252
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 25
CviAII CATG 2 cut(s) 179, 188
CviJI RGCY 9 cut(s) 34, 71, 121, 164, 172, 256, 279, 317, 343
CviKI_1 RGCY 9 cut(s) 34, 71, 121, 164, 172, 256, 279, 317, 343
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 122
DpnI GATC 3 cut(s) 39, 53, 367
DpnII GATC 3 cut(s) 37, 51, 365
EciI GGCGGA 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 152
FaeI CATG 2 cut(s) 182, 191
FaiI YATR 4 cut(s) 180, 189, 285, 386
FatI CATG 2 cut(s) 178, 187
FauI CCCGC 1 cut(s) 214
Fnu4HI GCNGC 5 cut(s) 32, 72, 233, 294, 302
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 5 cut(s) 32, 72, 233, 294, 302
FspBI CTAG 1 cut(s) 75
FspI TGCGCA 1 cut(s) 251
GlaI GCGC 1 cut(s) 251
GluI GCNGC 5 cut(s) 32, 72, 233, 294, 302
GsaI CCCAGC 1 cut(s) 321
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 2 cut(s) 256, 279
HapII CCGG 1 cut(s) 325
HgaI GACGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 252
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 2 cut(s) 182, 191
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 2 cut(s) 10, 85
HpaI GTTAAC 1 cut(s) 184
HpaII CCGG 1 cut(s) 325
HphI GGTGA 2 cut(s) 19, 76
Hpy166II GTNNAC 2 cut(s) 184, 227
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 3 cut(s) 89, 103, 371
Hpy8I GTNNAC 2 cut(s) 184, 227
Hpy99I CGWCG 2 cut(s) 61, 200
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 2 cut(s) 56, 198
HpyCH4V TGCA 3 cut(s) 235, 267, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 2 cut(s) 56, 198
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 2 cut(s) 182, 191
HspAI GCGC 1 cut(s) 250
KspAI GTTAAC 1 cut(s) 184
Kzo9I GATC 3 cut(s) 37, 51, 365
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 9 cut(s) 20, 26, 188, 238, 253, 270, 293, 303, 338
Lsp1109I GCAGC 4 cut(s) 43, 219, 305, 313
LweI GCATC 2 cut(s) 208, 237
MaeI CTAG 1 cut(s) 75
MaeII ACGT 2 cut(s) 56, 198
MaeIII GTNAC 1 cut(s) 199
MalI GATC 3 cut(s) 39, 53, 367
MboI GATC 3 cut(s) 37, 51, 365
MboII GAAGA 2 cut(s) 61, 375
MflI RGATCY 2 cut(s) 37, 365
MluCI AATT 1 cut(s) 207
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 1 cut(s) 325
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 310
NdeII GATC 3 cut(s) 37, 51, 365
NlaIII CATG 2 cut(s) 182, 191
NlaIV GGNNCC 2 cut(s) 173, 323
NruI TCGCGA 1 cut(s) 372
NsbI TGCGCA 1 cut(s) 251
NspI RCATGY 1 cut(s) 182
NspV TTCGAA 2 cut(s) 83, 338
PaeR7I CTCGAG 1 cut(s) 152
PfeI GAWTC 2 cut(s) 10, 85
Pfl23II CGTACG 1 cut(s) 24
PkrI GCNGC 5 cut(s) 33, 73, 234, 295, 303
PspFI CCCAGC 1 cut(s) 317
PspLI CGTACG 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 173, 323
PspXI VCTCGAGB 1 cut(s) 152
PsuI RGATCY 2 cut(s) 37, 365
PvuII CAGCTG 1 cut(s) 34
RruI TCGCGA 1 cut(s) 372
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 5 cut(s) 32, 72, 233, 294, 302
Sau3AI GATC 3 cut(s) 37, 51, 365
SetI ASST 9 cut(s) 36, 59, 102, 123, 153, 201, 319, 345, 392
SfaNI GCATC 2 cut(s) 208, 237
SfcI CTRYAG 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 152
SfuI TTCGAA 2 cut(s) 83, 338
SlaI CTCGAG 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 3 cut(s) 89, 152, 166
SmoI CTYRAG 3 cut(s) 89, 152, 166
Sse9I AATT 1 cut(s) 207
SsiI CCGC 3 cut(s) 72, 95, 221
SspMI CTAG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 2 cut(s) 59, 201
TaqI TCGA 4 cut(s) 59, 83, 153, 338
TasI AATT 1 cut(s) 207
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 10, 85
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseI GCWGC 4 cut(s) 31, 232, 293, 301
XceI RCATGY 1 cut(s) 182
XhoI CTCGAG 1 cut(s) 152
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.