RchiOBHm_Chr2g0105431

DNA repair metallo-beta-lactamase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
16710771 .. 16713448
2678 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGTCGATCAAAATGCCCAAAGGGCTCCCATTTTCAGTTGATACATGGAGTCCTTCCTCAAAGAGAAAGAGGCACCATTTCTTAACTCACGCCCACAAAGACCACTCCACTTGGATCTCCTCCCACTTTTCTTACCCGATTTACTCTACCCATCTCACCAAAACCCTCCTTCAACACTACCCTAAGGCATTAAAGCTGGGCAATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

8.05

Weight (kDa)

10.24

Isoelectric Point (pI)

58.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 72
AclWI GGATC 1 cut(s) 122
AgsI TTSAA 1 cut(s) 173
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
AlwI GGATC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 148
AxyI CCTNAGG 1 cut(s) 183
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 27
BccI CCATC 1 cut(s) 159
BcgI CGANNNNNNTGC 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 206
BglI GCCNNNNNGGC 1 cut(s) 22
BmiI GGNNCC 2 cut(s) 26, 74
Bse21I CCTNAGG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 109
BseYI CCCAGC 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 6, 114
BspLI GGNNCC 2 cut(s) 26, 74
BspPI GGATC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 72
BssMI GATC 2 cut(s) 6, 114
BstDEI CTNAG 1 cut(s) 183
BstKTI GATC 2 cut(s) 9, 117
BstMBI GATC 2 cut(s) 6, 114
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 114
BstYI RGATCY 1 cut(s) 114
Bsu36I CCTNAGG 1 cut(s) 183
CspCI CAANNNNNGTGG 2 cut(s) 92, 127
CviAII CATG 1 cut(s) 45
CviJI RGCY 2 cut(s) 25, 196
CviKI_1 RGCY 2 cut(s) 25, 196
DdeI CTNAG 1 cut(s) 183
DpnI GATC 2 cut(s) 8, 116
DpnII GATC 2 cut(s) 6, 114
Eco24I GRGCYC 1 cut(s) 27
Eco81I CCTNAGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 1 cut(s) 48
FaiI YATR 1 cut(s) 46
FatI CATG 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 200
Hin1II CATG 1 cut(s) 48
HinfI GANTC 1 cut(s) 49
HphI GGTGA 1 cut(s) 148
HpyAV CCTTC 2 cut(s) 63, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 1 cut(s) 48
Kzo9I GATC 2 cut(s) 6, 114
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 1 cut(s) 182
MalI GATC 2 cut(s) 8, 116
MboI GATC 2 cut(s) 6, 114
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 27
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 4 cut(s) 63, 67, 130, 176
MseI TTAA 2 cut(s) 83, 191
MwoI GCNNNNNNNGC 1 cut(s) 22
NdeII GATC 2 cut(s) 6, 114
NlaIII CATG 1 cut(s) 48
NlaIV GGNNCC 2 cut(s) 26, 74
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 26, 74
PsuI RGATCY 1 cut(s) 114
SaqAI TTAA 2 cut(s) 83, 191
Sau3AI GATC 2 cut(s) 6, 114
SchI GAGTC 1 cut(s) 58
SduI GDGCHC 1 cut(s) 27
SetI ASST 1 cut(s) 198
SfcI CTRYAG 1 cut(s) 206
SgeI CNNG 4 cut(s) 57, 101, 123, 148
TaqI TCGA 1 cut(s) 5
Tru1I TTAA 2 cut(s) 83, 191
Tru9I TTAA 2 cut(s) 83, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.