Rh5AG413300

DNA repair metallo-beta-lactamase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016985
Physical Location & Seq
Reverse (-)
71387294 .. 71392057
4764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG413300.1

Sequence Viewer

Length: 426 bp
ATGTCGATCGAAATGCCCAAAGGACTCCCCTTTTCAGTTGATACATGGAGTCCTTCTTCAAAGAGAAAGAGGCACCATTTCTTAACTCACGCCCACAAAGACCACTCCACTGGGATCTCCTCCCACTTTTCTTACCCGATTTACTCTACCCATCTCACCAAAACCGTCCTTCAACACTACCTCAAGCTTGATGAATCTTTGTTTGTGGGCATTAAAGTTGGGCAATCTGTAGCTATTGATGACCCGGATGGAGCCTTCGCTGATACGGCTTTCGATGCCAATCACTGTCGTGATGGCCAGGAGTTCTATACATTGAAGAAACCAGCTATTCTTGACAATAAAAGTGTTGTACAGAGTGTTGATGATAAAGTTCAGAGAAGAAGACATAAGGCATATCATTATGCTCTGTCTCAACCAGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DRMBL Lactamase_B_2

Protein Analysis

141

Amino Acids

16.04

Weight (kDa)

8.63

Isoelectric Point (pI)

62.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 72
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 295
AfaI GTAC 1 cut(s) 351
AgsI TTSAA 4 cut(s) 60, 173, 316, 422
AjnI CCWGG 1 cut(s) 297
AleI CACNNNNGTG 1 cut(s) 288
AluBI AGCT 3 cut(s) 187, 233, 326
AluI AGCT 3 cut(s) 187, 233, 326
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 1 cut(s) 122
AoxI GGCC 1 cut(s) 295
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 148
BalI TGGCCA 1 cut(s) 297
BanI GGYRCC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 388
BccI CCATC 3 cut(s) 159, 242, 287
BceAI ACGGC 1 cut(s) 282
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 299
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 414
BfmI CTRYAG 1 cut(s) 228
Bme1390I CCNGG 2 cut(s) 245, 299
BmiI GGNNCC 2 cut(s) 74, 253
BmrFI CCNGG 2 cut(s) 245, 299
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 388
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 279
Bse1I ACTGG 2 cut(s) 115, 416
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 279
BseNI ACTGG 2 cut(s) 115, 416
BseRI GAGGAG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 414
BsnI GGCC 1 cut(s) 297
Bsp1407I TGTACA 1 cut(s) 349
Bsp143I GATC 2 cut(s) 6, 114
BspANI GGCC 1 cut(s) 297
BspLI GGNNCC 2 cut(s) 74, 253
BspPI GGATC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 72
BsrGI TGTACA 1 cut(s) 349
BsrI ACTGG 2 cut(s) 115, 416
BssMI GATC 2 cut(s) 6, 114
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 2 cut(s) 166, 287
BstAUI TGTACA 1 cut(s) 349
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 2 cut(s) 9, 117
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 2 cut(s) 6, 114
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 266, 275
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 243, 297
BstSFI CTRYAG 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 388
BstX2I RGATCY 1 cut(s) 114
BstXI CCANNNNNNTGG 1 cut(s) 110
BstYI RGATCY 1 cut(s) 114
BsuRI GGCC 1 cut(s) 297
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 108, 283
Csp6I GTAC 1 cut(s) 350
CviAII CATG 1 cut(s) 45
CviJI RGCY 6 cut(s) 187, 233, 254, 269, 297, 326
CviKI_1 RGCY 6 cut(s) 187, 233, 254, 269, 297, 326
CviQI GTAC 1 cut(s) 350
DpnI GATC 2 cut(s) 8, 116
DpnII GATC 2 cut(s) 6, 114
EaeI YGGCCR 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 48
FaiI YATR 5 cut(s) 46, 309, 387, 394, 402
FatI CATG 1 cut(s) 44
FokI GGATG 1 cut(s) 260
HaeIII GGCC 1 cut(s) 297
HapII CCGG 1 cut(s) 245
Hin1II CATG 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 3 cut(s) 24, 49, 194
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 375
Hpy188III TCNNGA 2 cut(s) 290, 332
HpyAV CCTTC 3 cut(s) 63, 179, 265
HpyCH4III ACNGT 2 cut(s) 166, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 275
Hsp92II CATG 1 cut(s) 48
Kzo9I GATC 2 cut(s) 6, 114
LmnI GCTCC 1 cut(s) 251
LpnPI CCDG 5 cut(s) 96, 258, 284, 311, 336
LweI GCATC 1 cut(s) 265
MalI GATC 2 cut(s) 8, 116
MboI GATC 2 cut(s) 6, 114
MboII GAAGA 4 cut(s) 48, 328, 390, 393
MflI RGATCY 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 297
MlyI GAGTC 2 cut(s) 18, 58
MnlI CCTC 3 cut(s) 63, 130, 191
Mox20I TGGCCA 1 cut(s) 297
MscI TGGCCA 1 cut(s) 297
MseI TTAA 2 cut(s) 83, 213
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 297
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 2 cut(s) 245, 299
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 266, 275
NciI CCSGG 1 cut(s) 245
NdeII GATC 2 cut(s) 6, 114
NlaIII CATG 1 cut(s) 48
NlaIV GGNNCC 2 cut(s) 74, 253
OliI CACNNNNGTG 1 cut(s) 288
PfeI GAWTC 1 cut(s) 194
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 2 cut(s) 18, 57
PpsI GAGTC 2 cut(s) 18, 57
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 2 cut(s) 74, 253
PsuI RGATCY 1 cut(s) 114
PvuI CGATCG 1 cut(s) 9
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 2 cut(s) 83, 213
Sau3AI GATC 2 cut(s) 6, 114
SchI GAGTC 2 cut(s) 18, 58
ScrFI CCNGG 2 cut(s) 245, 299
SetI ASST 4 cut(s) 183, 189, 235, 328
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 243, 297
TaaI ACNGT 2 cut(s) 166, 287
TaqI TCGA 3 cut(s) 5, 9, 273
TatI WGTACW 1 cut(s) 349
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 83, 213
Tru9I TTAA 2 cut(s) 83, 213
TscAI CASTG 2 cut(s) 115, 290
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 2 cut(s) 115, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.