RchiOBHm_Chr6g0263601

DNA repair metallo-beta-lactamase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
18471947 .. 18475600
3654 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23640

Sequence Viewer

Length: 306 bp
ATGTCGATCGAAATGCCCAAAGGGCTCCCCTTTTCAGTTGATACATGGAGTCCTTCTTCAAAGAGAAAGAGGCACCATTTCTTAACTCACGCCCACAAAGACCACTCCACTGGGATCTCCTCCCACTTTTCTTACCCGATTTACTCTACCCATCTCACCAAAACCGTCCTTCAACACTACCTCAAGCTTGATGAATCTTTGTTTGTGGGCATTAAAGTTGGGCAATCTGTAGCTATTGATGACCCGGATGGAGCCTTCGCTGATACAGCTTTCGATGCCAATCACTGTCGTGGTTACAAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.37

Weight (kDa)

7.96

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 72
AclWI GGATC 1 cut(s) 122
AgsI TTSAA 2 cut(s) 60, 173
AleI CACNNNNGTG 1 cut(s) 288
AluBI AGCT 3 cut(s) 187, 233, 269
AluI AGCT 3 cut(s) 187, 233, 269
AlwI GGATC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 148
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 27
BccI CCATC 2 cut(s) 159, 242
BcgI CGANNNNNNTGC 1 cut(s) 29
BcnI CCSGG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 228
BglI GCCNNNNNGGC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 245
BmiI GGNNCC 3 cut(s) 26, 74, 253
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 115
Bse8I GATNNNNATC 1 cut(s) 279
BseGI GGATG 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 279
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 6, 114
BspLI GGNNCC 3 cut(s) 26, 74, 253
BspPI GGATC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 115
BssMI GATC 2 cut(s) 6, 114
Bst4CI ACNGT 2 cut(s) 166, 287
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 2 cut(s) 9, 117
BstMBI GATC 2 cut(s) 6, 114
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 22, 266, 275
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 114
BstXI CCANNNNNNTGG 1 cut(s) 110
BstYI RGATCY 1 cut(s) 114
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 108, 283
CviAII CATG 1 cut(s) 45
CviJI RGCY 5 cut(s) 25, 187, 233, 254, 269
CviKI_1 RGCY 5 cut(s) 25, 187, 233, 254, 269
DpnI GATC 2 cut(s) 8, 116
DpnII GATC 2 cut(s) 6, 114
Eco24I GRGCYC 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 1 cut(s) 48
FaiI YATR 1 cut(s) 46
FatI CATG 1 cut(s) 44
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 27
HapII CCGG 1 cut(s) 245
Hin1II CATG 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 2 cut(s) 49, 194
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 148
HpyAV CCTTC 3 cut(s) 63, 179, 265
HpyCH4III ACNGT 2 cut(s) 166, 287
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 266, 275
Hsp92II CATG 1 cut(s) 48
Kzo9I GATC 2 cut(s) 6, 114
LmnI GCTCC 2 cut(s) 30, 251
LpnPI CCDG 2 cut(s) 96, 258
LweI GCATC 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 293
MalI GATC 2 cut(s) 8, 116
MboI GATC 2 cut(s) 6, 114
MboII GAAGA 1 cut(s) 48
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 27
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 3 cut(s) 63, 130, 191
MseI TTAA 2 cut(s) 83, 213
MslI CAYNNNNRTG 1 cut(s) 288
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 22, 266, 275
NciI CCSGG 1 cut(s) 245
NdeII GATC 2 cut(s) 6, 114
NlaIII CATG 1 cut(s) 48
NlaIV GGNNCC 3 cut(s) 26, 74, 253
OliI CACNNNNGTG 1 cut(s) 288
PfeI GAWTC 1 cut(s) 194
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PspN4I GGNNCC 3 cut(s) 26, 74, 253
PsuI RGATCY 1 cut(s) 114
PvuI CGATCG 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 2 cut(s) 83, 213
Sau3AI GATC 2 cut(s) 6, 114
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 27
SetI ASST 4 cut(s) 183, 189, 235, 271
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 228
SgeI CNNG 9 cut(s) 57, 101, 123, 148, 196, 200, 256, 257, 302
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 166, 287
TaqI TCGA 3 cut(s) 5, 9, 273
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 83, 213
Tru9I TTAA 2 cut(s) 83, 213
TscAI CASTG 2 cut(s) 115, 290
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 2 cut(s) 115, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.