Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0016985

Physical Location & Seq

Genomic Coordinates Forward (+)

21593244 .. 21611963

Gene Structure 18720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG228900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCGATCGAAATGCCCAAAGGGCTCCCCTTTTCAGTTGATACATGGAGTCCTTCTTCAAAGAGAAAGAGGCACCATTTCTTAACTCACGCCCACAAAGACCACTCCACTGGGATCTCCTCCCACTTTTCTTACCCGATTTACTCTACCCATCTCACCAAAACCGTCCTTCAACACTACCTCAAGCTTGATGAATCTTTGTTTGTGGGCATTAAAGTTGGGCAATCTGTAGCTATTGATGACCCGGATGGAGCCTTCGCTGATACGGCTTTCGATGCCAATCACTGTCGTGAACTGCAATGGTTGGAGAGTGAACCTAATGTGACAATCCTGTGTAAAGATTGCATTGATGGGTTTCTTGGTTTGATTGAGAAAGACGGTTCTAATGTGTTTGTAAATTGGGTTAAGAGCAATCAGATCAAAACTATAAGCGTTTACCAAACCCCGAAAGAGTTCTATACATTGAAGAAACCAGCTATTCTTGACAATAAAAGTGTTGTACAGGGAGCTAAAGCGTCTTGGGGTTGGAGTCGTATCTTAGATGGGAGGCAGGCTTTTTCTTCTCATACCTTTTGGAAAATTCATAATGGTGAATATGTTAACCCATGGACTGATAGGTCGTATGTTTGCAGAAACATTGTTACAGATTTAGGAATTGAAGGGAGGAGGGACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRMBL Lactamase_B_2

Protein Analysis

225

Amino Acids

25.6

Weight (kDa)

7.17

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016985)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0105431 RchiOBHm_Chr6g0263601
rosa_laevigata	RLG00000022681 RLG00000034266
rosa_rugosa	Rorug05G0207400
rosa_samantha	Rh2AG327200 Rh2AG390900 Rh2DG343900 Rh2DG344400 Rh3CG228900 Rh4AG128400 Rh5AG346400 Rh5AG413300 Rh5CG440500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	616
AccB1I	GGYRCC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	579
AfaI	GTAC	1 cut(s)	501
AgsI	TTSAA	4 cut(s)	60, 173, 466, 659
AleI	CACNNNNGTG	1 cut(s)	288
AluBI	AGCT	4 cut(s)	187, 233, 476, 509
AluI	AGCT	4 cut(s)	187, 233, 476, 509
AlwI	GGATC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	579
Asp700I	GAANNNNTTC	1 cut(s)	452
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	148, 602
BanI	GGYRCC	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	27
BccI	CCATC	4 cut(s)	159, 242, 344, 536
BceAI	ACGGC	1 cut(s)	282
BcgI	CGANNNNNNTGC	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	228
BglI	GCCNNNNNGGC	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	245
BmiI	GGNNCC	3 cut(s)	26, 74, 253
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	265
BmuI	ACTGGG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	605
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	605
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	109
Bsh1285I	CGRYCG	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	72
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	499
Bsp143I	GATC	3 cut(s)	6, 114, 417
Bsp19I	CCATGG	1 cut(s)	605
BspLI	GGNNCC	3 cut(s)	26, 74, 253
BspPI	GGATC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	605
BssMI	GATC	3 cut(s)	6, 114, 417
BssT1I	CCWWGG	1 cut(s)	605
Bst4CI	ACNGT	3 cut(s)	166, 287, 380
BstAUI	TGTACA	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	1 cut(s)	538
BstDSI	CCRYGG	1 cut(s)	605
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	3 cut(s)	9, 117, 420
BstMBI	GATC	3 cut(s)	6, 114, 417
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 266, 275
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	114
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	605
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	108, 283
Cac8I	GCNNGC	1 cut(s)	552
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	2 cut(s)	45, 606
CviJI	RGCY	8 cut(s)	25, 187, 233, 254, 269, 476, 509, 554
CviKI_1	RGCY	8 cut(s)	25, 187, 233, 254, 269, 476, 509, 554
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	1 cut(s)	538
DpnI	GATC	3 cut(s)	8, 116, 419
DpnII	GATC	3 cut(s)	6, 114, 417
DrdI	GACNNNNNNGTC	1 cut(s)	616
DseDI	GACNNNNNNGTC	1 cut(s)	616
Eco130I	CCWWGG	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	605
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	605
FaeI	CATG	2 cut(s)	48, 609
FaiI	YATR	8 cut(s)	46, 428, 459, 567, 585, 597, 607, 624
FatI	CATG	2 cut(s)	44, 605
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	27
HapII	CCGG	1 cut(s)	245
HgaI	GACGC	1 cut(s)	504
Hin1II	CATG	2 cut(s)	48, 609
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	3 cut(s)	49, 194, 529
HpaI	GTTAAC	1 cut(s)	601
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	2 cut(s)	148, 602
Hpy166II	GTNNAC	4 cut(s)	293, 314, 436, 601
Hpy188I	TCNGA	1 cut(s)	417
Hpy188III	TCNNGA	2 cut(s)	290, 482
Hpy8I	GTNNAC	4 cut(s)	293, 314, 436, 601
HpyAV	CCTTC	4 cut(s)	63, 179, 265, 653
HpyCH4III	ACNGT	3 cut(s)	166, 287, 380
HpyCH4V	TGCA	3 cut(s)	298, 345, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 266, 275
HpyF3I	CTNAG	1 cut(s)	538
Hsp92II	CATG	2 cut(s)	48, 609
KspAI	GTTAAC	1 cut(s)	601
Kzo9I	GATC	3 cut(s)	6, 114, 417
LmnI	GCTCC	3 cut(s)	30, 251, 506
LpnPI	CCDG	6 cut(s)	96, 258, 344, 486, 488, 536
LweI	GCATC	1 cut(s)	265
MaeIII	GTNAC	2 cut(s)	322, 640
MalI	GATC	3 cut(s)	8, 116, 419
MboI	GATC	3 cut(s)	6, 114, 417
MboII	GAAGA	3 cut(s)	48, 478, 552
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	3 cut(s)	397, 579, 654
MlyI	GAGTC	2 cut(s)	58, 538
MmeI	TCCRAC	2 cut(s)	285, 506
MnlI	CCTC	6 cut(s)	63, 130, 191, 540, 657, 660
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	4 cut(s)	83, 213, 405, 600
MslI	CAYNNNNRTG	2 cut(s)	288, 588
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	22, 266, 275
NciI	CCSGG	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	605
NdeII	GATC	3 cut(s)	6, 114, 417
NlaIII	CATG	2 cut(s)	48, 609
NlaIV	GGNNCC	3 cut(s)	26, 74, 253
NmuCI	GTSAC	1 cut(s)	322
OliI	CACNNNNGTG	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	194
Ple19I	CGATCG	1 cut(s)	9
PleI	GAGTC	2 cut(s)	57, 537
PpsI	GAGTC	2 cut(s)	57, 537
PspN4I	GGNNCC	3 cut(s)	26, 74, 253
PsuI	RGATCY	1 cut(s)	114
PvuI	CGATCG	1 cut(s)	9
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
RseI	CAYNNNNRTG	2 cut(s)	288, 588
SaqAI	TTAA	4 cut(s)	83, 213, 405, 600
Sau3AI	GATC	3 cut(s)	6, 114, 417
SchI	GAGTC	2 cut(s)	58, 538
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	8 cut(s)	183, 189, 235, 319, 478, 511, 572, 620
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	228
SmiMI	CAYNNNNRTG	2 cut(s)	288, 588
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	3 cut(s)	397, 579, 654
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	3 cut(s)	166, 287, 380
TaqI	TCGA	3 cut(s)	5, 9, 273
TasI	AATT	3 cut(s)	397, 579, 654
TatI	WGTACW	1 cut(s)	499
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	4 cut(s)	83, 213, 405, 600
Tru9I	TTAA	4 cut(s)	83, 213, 405, 600
TscAI	CASTG	2 cut(s)	115, 290
TseFI	GTSAC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	2 cut(s)	207, 572
TspRI	CASTG	2 cut(s)	115, 290
XapI	RAATTY	1 cut(s)	579
XmnI	GAANNNNTTC	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.