Rh2DG344400

DNA repair metallo-beta-lactamase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0016985
Physical Location & Seq
Reverse (-)
47019501 .. 47023998
4498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG344400.1

Sequence Viewer

Length: 477 bp
ATGTCGATCGAAATGCCCAAAGGGCTCCCCTTTTCAGTTGATACATGGAGTCCTTCTTCAAAGAGAAAGAGGCACCATTTCTTAACTCACGCCCACAAAGACCACTCCACTGGGATCTCCTCCCACTTTTCTTACCCGATTTACTCTACCCATCTCACCAAAACCATCCTTCAACACTACCTCAAGCTTGATGAATCTTTGTTTGTGGGCATTAAAGTTGGGCAATCTGTAGCTATTGATGACCCGGATGGAGCCTTCGCTGATACGGCTTTCGATGCCAATCACTGTCGTGAACTGCAATGGTTGGAGAGTGAACCTAATGTGACAATCCTGTGTAAAGATTGCATTGATGGGTTTCTTGGTTTGATTGAGAAAGACGGTTCTAATGTGTTTGAGTTCTATACATTGAAGAAACCAGCTATTCTTGACAATAAAAGTGTTGTACAGGTAAGTGATACCTTCTCAGTCATTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DRMBL Lactamase_B_2

Protein Analysis

158

Amino Acids

17.79

Weight (kDa)

5.94

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 72
AclWI GGATC 1 cut(s) 122
AfaI GTAC 1 cut(s) 444
AgsI TTSAA 3 cut(s) 60, 173, 409
AleI CACNNNNGTG 1 cut(s) 288
AluBI AGCT 3 cut(s) 187, 233, 419
AluI AGCT 3 cut(s) 187, 233, 419
AlwI GGATC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 148
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 27
BccI CCATC 4 cut(s) 159, 173, 242, 344
BceAI ACGGC 1 cut(s) 282
BcgI CGANNNNNNTGC 1 cut(s) 29
BcnI CCSGG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 228
BglI GCCNNNNNGGC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 245
BmiI GGNNCC 3 cut(s) 26, 74, 253
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 305
Bse8I GATNNNNATC 1 cut(s) 279
BseGI GGATG 2 cut(s) 165, 253
BseJI GATNNNNATC 1 cut(s) 279
BseMI GCAATG 1 cut(s) 305
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 27
Bsp1407I TGTACA 1 cut(s) 442
Bsp143I GATC 2 cut(s) 6, 114
BspCNI CTCAG 1 cut(s) 476
BspLI GGNNCC 3 cut(s) 26, 74, 253
BspPI GGATC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 305
BsrGI TGTACA 1 cut(s) 442
BsrI ACTGG 1 cut(s) 115
BssMI GATC 2 cut(s) 6, 114
Bst4CI ACNGT 2 cut(s) 287, 380
BstAUI TGTACA 1 cut(s) 442
BstDEI CTNAG 1 cut(s) 463
BstF5I GGATG 2 cut(s) 165, 253
BstKTI GATC 2 cut(s) 9, 117
BstMBI GATC 2 cut(s) 6, 114
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 22, 266, 275
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 114
BstXI CCANNNNNNTGG 1 cut(s) 110
BstYI RGATCY 1 cut(s) 114
BtsCI GGATG 2 cut(s) 165, 253
BtsIMutI CAGTG 2 cut(s) 108, 283
Csp6I GTAC 1 cut(s) 443
CviAII CATG 1 cut(s) 45
CviJI RGCY 6 cut(s) 25, 187, 233, 254, 269, 419
CviKI_1 RGCY 6 cut(s) 25, 187, 233, 254, 269, 419
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 1 cut(s) 463
DpnI GATC 2 cut(s) 8, 116
DpnII GATC 2 cut(s) 6, 114
Eco24I GRGCYC 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 1 cut(s) 48
FaiI YATR 2 cut(s) 46, 402
FatI CATG 1 cut(s) 44
FokI GGATG 2 cut(s) 152, 260
FriOI GRGCYC 1 cut(s) 27
HapII CCGG 1 cut(s) 245
Hin1II CATG 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 2 cut(s) 49, 194
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 293, 314
Hpy188III TCNNGA 2 cut(s) 290, 425
Hpy8I GTNNAC 2 cut(s) 293, 314
HpyAV CCTTC 4 cut(s) 63, 179, 265, 469
HpyCH4III ACNGT 2 cut(s) 287, 380
HpyCH4V TGCA 2 cut(s) 298, 345
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 266, 275
HpyF3I CTNAG 1 cut(s) 463
Hsp92II CATG 1 cut(s) 48
Kzo9I GATC 2 cut(s) 6, 114
LmnI GCTCC 2 cut(s) 30, 251
LpnPI CCDG 5 cut(s) 96, 258, 344, 429, 431
LweI GCATC 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 322
MalI GATC 2 cut(s) 8, 116
MboI GATC 2 cut(s) 6, 114
MboII GAAGA 2 cut(s) 48, 421
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 27
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 3 cut(s) 63, 130, 191
MseI TTAA 2 cut(s) 83, 213
MslI CAYNNNNRTG 1 cut(s) 288
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 22, 266, 275
NciI CCSGG 1 cut(s) 245
NdeII GATC 2 cut(s) 6, 114
NlaIII CATG 1 cut(s) 48
NlaIV GGNNCC 3 cut(s) 26, 74, 253
NmuCI GTSAC 1 cut(s) 322
OliI CACNNNNGTG 1 cut(s) 288
PfeI GAWTC 1 cut(s) 194
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PspN4I GGNNCC 3 cut(s) 26, 74, 253
PsuI RGATCY 1 cut(s) 114
PvuI CGATCG 1 cut(s) 9
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 2 cut(s) 83, 213
Sau3AI GATC 2 cut(s) 6, 114
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 27
SetI ASST 7 cut(s) 183, 189, 235, 319, 421, 450, 461
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 287, 380
TaqI TCGA 3 cut(s) 5, 9, 273
TatI WGTACW 1 cut(s) 442
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 83, 213
Tru9I TTAA 2 cut(s) 83, 213
TscAI CASTG 2 cut(s) 115, 290
TseFI GTSAC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 2 cut(s) 115, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.