RchiOBHm_Chr2g0107181

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018352
Physical Location & Seq
Reverse (-)
18525229 .. 18527595
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1074 bp
ATGTTCCTCAAATACATTGCAGGTCTTTCTTCAAACACAATTGTGACATTGGAGGTTTCCTTATTCATGACGCTCTTAATCAAGCAGAATAAGATACTTATTTTGTGTGCCATTGCTCTCTCATTAGACCCCCTTTTCTGTTATATGCTGCTCGTTCATGGTGAGAAGAAGTGCCTCGGATTGGACAGAACGCTGCGTACCATAGCTATTGTTTCGCGATCGGCCATCGACTTCTTGTACATGTTGCATATAATTTTTCAATTCTGTGCTACTCGTTCTATTAATCCAGTCGACATACTTGTGATTCTTCCTCTTCACAGGGTACTTTTGGATTGTAAATTATCAGTGCTAGTTTTTGCTATCATTCCAGAACTGAACAACTTGAGGGTTTTAAAAGCAACAGAGTCATTGAATTTCATATTTATCTTTCAATATGTGCCGAGGTTTCTTCAGATTTGCTCCTGGTTGAAAAAAGATCTAGGGTCTTCTAGTATCCTGGCGAAATCTACATGGGCTAATCTCTTCTTTTTTATGCTGGCCAGCATTTTGTTTGCCTTGAAGGTCATCGGAGCGTTTTGGTACTTGTTTTCGGTAGAAAGAAAAGCAACTTGCTGGCTAAAAGCCTGCAGTCATGTAGGTGTTCATTGTTCTTTATATTGTAATGATGCACATAGAGCTAGCATAATTCTGAACGATTATTGCTCTAAAAACTCCAGATGTGGAGTTGTGGATTCAGCGGATATTGTACAAAGGATTTCTTACTGTTTCTGGTGGGGGCTGCAAAATCTGAGCTCTCTTGGTCAAGGCCTCAAAACAAGTACCTATGTGTGGGAAATCTACTTTTCCACCTTCATTTCAATTTCTGGCCTGCTATCATTTGCATTTCTTATTGGAAATGTGCAGGCATATTTGCTGTCGGAAGTTGCAGGATCAGAGGAAAGGAGAGTACGAGTTAAGGAAATGAGATTGAAGAGGCGAGAGATGGAGTCATGGAGGCCTTCCCTATCAAGCCTGAGAATCTTAGAGAGCGGATTTTGCAAACCATTGAATGCAAATTACAAGAAAATATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

357

Amino Acids

40.78

Weight (kDa)

9.31

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17020
rosa_chinensis RchiOBHm_Chr2g0107171 RchiOBHm_Chr2g0107181
rosa_laevigata RLG00000017557
rosa_multiflora Rmu_sc0002945.1_g000016
rosa_roxburghii Rroxscaffold_2G00136570
rosa_rugosa Rorug02G0140500
rosa_samantha Rh2BG203200 Rh2DG198600
rosa_wichuraiana Rw2G015120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 11
AccBSI CCGCTC 1 cut(s) 1029
AccI GTMKAC 1 cut(s) 291
AccII CGCG 1 cut(s) 217
AciI CCGC 2 cut(s) 737, 1029
AclWI GGATC 1 cut(s) 937
AcoI YGGCCR 2 cut(s) 222, 537
AcsI RAATTY 1 cut(s) 412
AcuI CTGAAG 1 cut(s) 434
AfaI GTAC 7 cut(s) 199, 239, 324, 581, 747, 820, 948
AfiI CCNNNNNNNGG 2 cut(s) 181, 828
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 9 cut(s) 33, 260, 412, 431, 469, 559, 858, 970, 1048
AjnI CCWGG 2 cut(s) 461, 495
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 3 cut(s) 206, 677, 792
AluI AGCT 3 cut(s) 206, 677, 792
Alw21I GWGCWC 1 cut(s) 794
AlwI GGATC 1 cut(s) 937
AoxI GGCC 5 cut(s) 222, 537, 805, 865, 995
ApeKI GCWGC 3 cut(s) 148, 193, 778
ApoI RAATTY 1 cut(s) 412
AseI ATTAAT 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 173
AsuNHI GCTAGC 1 cut(s) 677
BalI TGGCCA 1 cut(s) 539
BanII GRGCYC 1 cut(s) 794
BbsI GAAGAC 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 794
BbvI GCAGC 3 cut(s) 135, 180, 765
BccI CCATC 2 cut(s) 233, 976
BciT130I CCWGG 2 cut(s) 463, 497
BciVI GTATCC 1 cut(s) 503
BfaI CTAG 4 cut(s) 350, 479, 489, 678
BfmI CTRYAG 1 cut(s) 625
BfuAI ACCTGC 1 cut(s) 11
BfuI GTATCC 1 cut(s) 503
BglII AGATCT 1 cut(s) 475
BisI GCNGC 3 cut(s) 149, 194, 779
BlsI GCNGC 3 cut(s) 150, 195, 780
Bme1390I CCNGG 2 cut(s) 463, 497
BmrFI CCNGG 2 cut(s) 463, 497
BmsI GCATC 1 cut(s) 655
BmtI GCTAGC 1 cut(s) 681
BpiI GAAGAC 1 cut(s) 477
BpmI CTGGAG 1 cut(s) 697
BpuEI CTTGAG 1 cut(s) 403
BsaJI CCNNGG 2 cut(s) 175, 440
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 828
Bse1I ACTGG 1 cut(s) 287
Bse3DI GCAATG 2 cut(s) 15, 111
BseBI CCWGG 2 cut(s) 463, 497
BseDI CCNNGG 2 cut(s) 175, 440
BseLI CCNNNNNNNGG 2 cut(s) 181, 828
BseMI GCAATG 2 cut(s) 15, 111
BseMII CTCAG 2 cut(s) 779, 1004
BseNI ACTGG 1 cut(s) 287
BseXI GCAGC 3 cut(s) 135, 180, 765
BsgI GTGCAG 1 cut(s) 920
Bsh1236I CGCG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 221
BshFI GGCC 5 cut(s) 224, 539, 807, 867, 997
BsiEI CGRYCG 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 794
BslI CCNNNNNNNGG 2 cut(s) 181, 828
BsmI GAATGC 1 cut(s) 1054
BsnI GGCC 5 cut(s) 224, 539, 807, 867, 997
Bsp1286I GDGCHC 1 cut(s) 794
Bsp1407I TGTACA 2 cut(s) 237, 745
Bsp143I GATC 3 cut(s) 218, 475, 929
Bsp68I TCGCGA 1 cut(s) 217
BspACI CCGC 2 cut(s) 737, 1029
BspANI GGCC 5 cut(s) 224, 539, 807, 867, 997
BspCNI CTCAG 2 cut(s) 780, 1005
BspFNI CGCG 1 cut(s) 217
BspHI TCATGA 1 cut(s) 66
BspMAI CTGCAG 1 cut(s) 629
BspMI ACCTGC 1 cut(s) 11
BspOI GCTAGC 1 cut(s) 681
BspPI GGATC 1 cut(s) 937
BsrBI CCGCTC 1 cut(s) 1029
BsrDI GCAATG 2 cut(s) 15, 111
BsrGI TGTACA 2 cut(s) 237, 745
BsrI ACTGG 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 175, 440
BssMI GATC 3 cut(s) 218, 475, 929
Bst2UI CCWGG 2 cut(s) 463, 497
Bst4CI ACNGT 1 cut(s) 764
Bst6I CTCTTC 3 cut(s) 318, 527, 965
BstAUI TGTACA 2 cut(s) 237, 745
BstC8I GCNNGC 7 cut(s) 537, 541, 614, 625, 679, 869, 903
BstDEI CTNAG 3 cut(s) 788, 1013, 1021
BstFNI CGCG 1 cut(s) 217
BstKTI GATC 3 cut(s) 221, 478, 932
BstMBI GATC 3 cut(s) 218, 475, 929
BstMCI CGRYCG 1 cut(s) 221
BstMWI GCNNNNNNNGC 2 cut(s) 674, 1035
BstNI CCWGG 2 cut(s) 463, 497
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 461, 495
BstSFI CTRYAG 1 cut(s) 625
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 3 cut(s) 135, 180, 765
BstV2I GAAGAC 1 cut(s) 477
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BsuI GTATCC 1 cut(s) 503
BsuRI GGCC 5 cut(s) 224, 539, 807, 867, 997
BtsIMutI CAGTG 1 cut(s) 351
BtuMI TCGCGA 1 cut(s) 217
BveI ACCTGC 1 cut(s) 11
Cac8I GCNNGC 7 cut(s) 537, 541, 614, 625, 679, 869, 903
CciI TCATGA 1 cut(s) 66
CseI GACGC 1 cut(s) 79
Csp6I GTAC 7 cut(s) 198, 238, 323, 580, 746, 819, 947
CviAII CATG 6 cut(s) 67, 158, 241, 510, 632, 990
CviQI GTAC 7 cut(s) 198, 238, 323, 580, 746, 819, 947
DdeI CTNAG 3 cut(s) 788, 1013, 1021
DpnI GATC 3 cut(s) 220, 477, 931
DpnII GATC 3 cut(s) 218, 475, 929
DraI TTTAAA 1 cut(s) 393
EaeI YGGCCR 2 cut(s) 222, 537
Eam1104I CTCTTC 3 cut(s) 318, 527, 965
EarI CTCTTC 3 cut(s) 318, 527, 965
Ecl136II GAGCTC 1 cut(s) 792
Eco147I AGGCCT 2 cut(s) 807, 997
Eco24I GRGCYC 1 cut(s) 794
Eco53kI GAGCTC 1 cut(s) 792
Eco57I CTGAAG 1 cut(s) 434
EcoICRI GAGCTC 1 cut(s) 792
EcoRII CCWGG 2 cut(s) 461, 495
EcoT38I GRGCYC 1 cut(s) 794
FaeI CATG 6 cut(s) 70, 161, 244, 513, 635, 993
FalI AAGNNNNNCTT 2 cut(s) 742, 774
FatI CATG 6 cut(s) 66, 157, 240, 509, 631, 989
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 149, 194, 779
FriOI GRGCYC 1 cut(s) 794
Fsp4HI GCNGC 3 cut(s) 149, 194, 779
FspBI CTAG 4 cut(s) 350, 479, 489, 678
GluI GCNGC 3 cut(s) 149, 194, 779
GsuI CTGGAG 1 cut(s) 697
HaeIII GGCC 5 cut(s) 224, 539, 807, 867, 997
HgaI GACGC 1 cut(s) 79
Hin1II CATG 6 cut(s) 70, 161, 244, 513, 635, 993
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 5 cut(s) 304, 404, 731, 986, 1017
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 7 cut(s) 179, 453, 569, 690, 789, 919, 934
Hpy188III TCNNGA 4 cut(s) 67, 216, 368, 714
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 3 cut(s) 553, 859, 1008
HpyCH4III ACNGT 1 cut(s) 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 674, 1035
HpyF3I CTNAG 3 cut(s) 788, 1013, 1021
Hsp92II CATG 6 cut(s) 70, 161, 244, 513, 635, 993
Kzo9I GATC 3 cut(s) 218, 475, 929
LmnI GCTCC 2 cut(s) 464, 569
Lsp1109I GCAGC 3 cut(s) 135, 180, 765
LweI GCATC 1 cut(s) 655
MaeI CTAG 4 cut(s) 350, 479, 489, 678
MaeIII GTNAC 1 cut(s) 43
MalI GATC 3 cut(s) 220, 477, 931
MbiI CCGCTC 1 cut(s) 1029
MboI GATC 3 cut(s) 218, 475, 929
MboII GAAGA 8 cut(s) 21, 178, 299, 305, 440, 477, 514, 982
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 794
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 8 cut(s) 39, 252, 260, 338, 412, 684, 858, 1054
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 2 cut(s) 413, 995
MmeI TCCRAC 1 cut(s) 897
Mox20I TGGCCA 1 cut(s) 539
MscI TGGCCA 1 cut(s) 539
MseI TTAA 4 cut(s) 77, 282, 392, 954
MslI CAYNNNNRTG 3 cut(s) 41, 299, 636
Msp20I TGGCCA 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 737
MspR9I CCNGG 2 cut(s) 463, 497
MunI CAATTG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 1054
MvaI CCWGG 2 cut(s) 463, 497
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 2 cut(s) 674, 1035
NdeII GATC 3 cut(s) 218, 475, 929
NheI GCTAGC 1 cut(s) 677
NlaIII CATG 6 cut(s) 70, 161, 244, 513, 635, 993
NmeAIII GCCGAG 1 cut(s) 465
NmuCI GTSAC 1 cut(s) 43
NruI TCGCGA 1 cut(s) 217
NspI RCATGY 1 cut(s) 244
OliI CACNNNNGTG 1 cut(s) 41
PagI TCATGA 1 cut(s) 66
PceI AGGCCT 2 cut(s) 807, 997
PciI ACATGT 1 cut(s) 240
PctI GAATGC 1 cut(s) 1054
PfeI GAWTC 3 cut(s) 304, 731, 1017
PkrI GCNGC 3 cut(s) 150, 195, 780
Ple19I CGATCG 1 cut(s) 221
PleI GAGTC 2 cut(s) 412, 994
PpsI GAGTC 2 cut(s) 412, 994
PscI ACATGT 1 cut(s) 240
PshBI ATTAAT 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 794
Psp6I CCWGG 2 cut(s) 461, 495
PspGI CCWGG 2 cut(s) 461, 495
PsrI GAACNNNNNNTAC 2 cut(s) 181, 213
PstI CTGCAG 1 cut(s) 629
PsuI RGATCY 1 cut(s) 475
PvuI CGATCG 1 cut(s) 221
RruI TCGCGA 1 cut(s) 217
RsaI GTAC 7 cut(s) 199, 239, 324, 581, 747, 820, 948
RsaNI GTAC 7 cut(s) 198, 238, 323, 580, 746, 819, 947
RseI CAYNNNNRTG 3 cut(s) 41, 299, 636
SacI GAGCTC 1 cut(s) 794
SalI GTCGAC 1 cut(s) 290
SaqAI TTAA 4 cut(s) 77, 282, 392, 954
SatI GCNGC 3 cut(s) 149, 194, 779
Sau3AI GATC 3 cut(s) 218, 475, 929
SchI GAGTC 2 cut(s) 413, 995
ScrFI CCNGG 2 cut(s) 463, 497
SduI GDGCHC 1 cut(s) 794
SfaNI GCATC 1 cut(s) 655
SfcI CTRYAG 1 cut(s) 625
SmiMI CAYNNNNRTG 3 cut(s) 41, 299, 636
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 8 cut(s) 39, 252, 260, 338, 412, 684, 858, 1054
SseBI AGGCCT 2 cut(s) 807, 997
SsiI CCGC 2 cut(s) 737, 1029
SspMI CTAG 4 cut(s) 350, 479, 489, 678
SstI GAGCTC 1 cut(s) 794
StuI AGGCCT 2 cut(s) 807, 997
StyD4I CCNGG 2 cut(s) 461, 495
TaaI ACNGT 1 cut(s) 764
TaqI TCGA 2 cut(s) 228, 291
TasI AATT 8 cut(s) 39, 252, 260, 338, 412, 684, 858, 1054
TatI WGTACW 2 cut(s) 237, 745
TfiI GAWTC 3 cut(s) 304, 731, 1017
Tru1I TTAA 4 cut(s) 77, 282, 392, 954
Tru9I TTAA 4 cut(s) 77, 282, 392, 954
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 3 cut(s) 148, 193, 778
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 5 cut(s) 55, 146, 406, 632, 841
TspRI CASTG 1 cut(s) 351
VspI ATTAAT 1 cut(s) 282
XapI RAATTY 1 cut(s) 412
XceI RCATGY 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 4 cut(s) 350, 479, 489, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.