Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018352

Physical Location & Seq

Genomic Coordinates Forward (+)

74267892 .. 74269267

Gene Structure 1376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAGTATAGTAGCTAGTAAAGATAGACCTTGTCTGCTTTTGATATATTTCAATTTTACATTGTGCAGCTCTCTTGGTCCAGGCCTCAAAACAAGTACCTATGTGTGGGAAATCTACTTTTCCATCTTCATTTCAATTTCTGGCCTGCTATCATTTGCATTTCTTATTGGAAATGTGCAGGCATATTTGCTGTCGGAAGTTGCAAGATCAGAGGAAAGGAGAGTACGAGTTAAGGAAATGAGATTGAAGAGGCAAGAGATGGAGTCATGGAGGCCTTTCCTATCCTTCCCTGAGAATCTTAGGGAGCGAATTTTGCAAACCATTGAATGCAAATTACAAGAAAATATACTAATTGATGTGCACAATTTTCTTCCCCATTATCCATGGACCTCAGGAAAGATACAATACGACATCTTGGCCTGGATTTATTTAAAAATTGAGTTTTACATTGCTGAGTGTCCAGCGTTTGACAAATGGGATACGCAACTGCTAGATGCAATGTTTGATAGTCTCAAGCCAGTAATCTATACAGAGGAAAGTTACGTTTTTCAAGAGAGTGGAACTGTGGATGCAATGCTCTTCATAGCACAAGGAAGAGCACATCGGATGGCGTTTGATCCCCAATCGTCATCTATTAAACCTCCCTCATCCATCGCAATTGTCCAGTCTCTAAGTAAAGTTCTGACTGTTCTGGCACTTGTTTTAAAAGCAGATGACTTGAAGCTCATAGCCTCCCAGTTCTGGCACCTCCATGGCATTCACCATGTCCGCAACACTTTCAGGTTTTACTCAGGTCAATGGAGACTTTGGGCAGCTTGTTACATACAAGCATCGTGGCACCGTTATTGCAAGATGAAACTTAAAAATTCATTGGAAGAGCAGAATGGAAGGTTGCAAGATGCATTGGCAAAGGCTGGGACTAGCTCCTCAAGTCTAGGTGACACCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

316

Amino Acids

36.52

Weight (kDa)

8.43

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018352)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17020
rosa_chinensis	RchiOBHm_Chr2g0107171 RchiOBHm_Chr2g0107181
rosa_laevigata	RLG00000017557
rosa_multiflora	Rmu_sc0002945.1_g000016
rosa_roxburghii	Rroxscaffold_2G00136570
rosa_rugosa	Rorug02G0140500
rosa_samantha	Rh2BG203200 Rh2DG198600
rosa_wichuraiana	Rw2G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	744, 837
AciI	CCGC	1 cut(s)	769
AclWI	GGATC	1 cut(s)	611
AcsI	RAATTY	2 cut(s)	309, 865
AfaI	GTAC	2 cut(s)	97, 225
AfiI	CCNNNNNNNGG	2 cut(s)	105, 741
AgsI	TTSAA	6 cut(s)	52, 135, 247, 326, 551, 721
AjnI	CCWGG	2 cut(s)	79, 419
AluBI	AGCT	5 cut(s)	14, 69, 724, 815, 924
AluI	AGCT	5 cut(s)	14, 69, 724, 815, 924
Alw21I	GWGCWC	2 cut(s)	363, 601
Alw26I	GTCTC	3 cut(s)	515, 672, 796
Alw44I	GTGCAC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	611
AoxI	GGCC	4 cut(s)	82, 142, 272, 417
ApaLI	GTGCAC	1 cut(s)	359
ApeKI	GCWGC	2 cut(s)	66, 812
ApoI	RAATTY	2 cut(s)	309, 865
AspS9I	GGNCC	2 cut(s)	77, 387
AsuHPI	GGTGA	2 cut(s)	752, 950
AvaII	GGWCC	2 cut(s)	77, 387
AxyI	CCTNAGG	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	363
BanI	GGYRCC	2 cut(s)	744, 837
Bbv12I	GWGCWC	2 cut(s)	363, 601
BbvI	GCAGC	2 cut(s)	78, 824
BccI	CCATC	4 cut(s)	131, 253, 601, 659
BciT130I	CCWGG	2 cut(s)	81, 421
BciVI	GTATCC	1 cut(s)	472
BcoDI	GTCTC	3 cut(s)	515, 672, 796
BfaI	CTAG	4 cut(s)	15, 491, 921, 935
BfuI	GTATCC	1 cut(s)	472
BisI	GCNGC	2 cut(s)	67, 813
BlsI	GCNGC	2 cut(s)	68, 814
Bme1390I	CCNGG	2 cut(s)	81, 421
Bme18I	GGWCC	2 cut(s)	77, 387
BmgT120I	GGNCC	2 cut(s)	77, 387
BmiI	GGNNCC	2 cut(s)	746, 839
BmrFI	CCNGG	2 cut(s)	81, 421
BmrI	ACTGGG	1 cut(s)	730
BmsI	GCATC	4 cut(s)	484, 559, 839, 889
BmuI	ACTGGG	1 cut(s)	730
BpuEI	CTTGAG	2 cut(s)	497, 913
BsaJI	CCNNGG	2 cut(s)	383, 751
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 741
Bse1I	ACTGG	3 cut(s)	518, 664, 736
Bse21I	CCTNAGG	1 cut(s)	391
Bse3DI	GCAATG	3 cut(s)	447, 504, 579
BseBI	CCWGG	2 cut(s)	81, 421
BseDI	CCNNGG	2 cut(s)	383, 751
BseGI	GGATG	3 cut(s)	574, 612, 647
BseLI	CCNNNNNNNGG	2 cut(s)	105, 741
BseMI	GCAATG	3 cut(s)	447, 504, 579
BseMII	CTCAG	4 cut(s)	282, 405, 444, 804
BseNI	ACTGG	3 cut(s)	518, 664, 736
BseRI	GAGGAG	1 cut(s)	916
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	78, 824
BseYI	CCCAGC	1 cut(s)	914
BsgI	GTGCAG	2 cut(s)	85, 197
BshFI	GGCC	4 cut(s)	84, 144, 274, 419
BshNI	GGYRCC	2 cut(s)	744, 837
BsiHKAI	GWGCWC	2 cut(s)	363, 601
BslFI	GGGAC	1 cut(s)	931
BslI	CCNNNNNNNGG	2 cut(s)	105, 741
BsmAI	GTCTC	3 cut(s)	515, 672, 796
BsmFI	GGGAC	1 cut(s)	931
BsmI	GAATGC	2 cut(s)	332, 756
BsnI	GGCC	4 cut(s)	84, 144, 274, 419
Bsp1286I	GDGCHC	2 cut(s)	363, 601
Bsp143I	GATC	2 cut(s)	206, 616
Bsp19I	CCATGG	2 cut(s)	383, 751
BspACI	CCGC	1 cut(s)	769
BspANI	GGCC	4 cut(s)	84, 144, 274, 419
BspCNI	CTCAG	4 cut(s)	283, 404, 445, 803
BspLI	GGNNCC	2 cut(s)	746, 839
BspPI	GGATC	1 cut(s)	611
BspQI	GCTCTTC	3 cut(s)	584, 589, 870
BspT107I	GGYRCC	2 cut(s)	744, 837
BsrDI	GCAATG	3 cut(s)	447, 504, 579
BsrI	ACTGG	3 cut(s)	518, 664, 736
BssECI	CCNNGG	2 cut(s)	383, 751
BssMI	GATC	2 cut(s)	206, 616
BssT1I	CCWWGG	2 cut(s)	383, 751
Bst2UI	CCWGG	2 cut(s)	81, 421
Bst4CI	ACNGT	3 cut(s)	565, 688, 842
Bst6I	CTCTTC	4 cut(s)	242, 584, 589, 870
BstC8I	GCNNGC	2 cut(s)	146, 180
BstDEI	CTNAG	6 cut(s)	291, 299, 391, 453, 671, 790
BstDSI	CCRYGG	2 cut(s)	383, 751
BstF5I	GGATG	3 cut(s)	574, 612, 647
BstKTI	GATC	2 cut(s)	209, 619
BstMAI	GTCTC	3 cut(s)	515, 672, 796
BstMBI	GATC	2 cut(s)	206, 616
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	2 cut(s)	81, 421
BstSCI	CCNGG	2 cut(s)	79, 419
BstSLI	GKGCMC	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	78, 824
Bsu36I	CCTNAGG	1 cut(s)	391
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	4 cut(s)	84, 144, 274, 419
BtgI	CCRYGG	2 cut(s)	383, 751
BtgZI	GCGATG	1 cut(s)	637
BtsCI	GGATG	3 cut(s)	574, 612, 647
Cac8I	GCNNGC	2 cut(s)	146, 180
Cfr13I	GGNCC	2 cut(s)	77, 387
Csp6I	GTAC	2 cut(s)	96, 224
CspCI	CAANNNNNGTGG	2 cut(s)	815, 850
CviAII	CATG	4 cut(s)	267, 384, 752, 764
CviQI	GTAC	2 cut(s)	96, 224
DdeI	CTNAG	6 cut(s)	291, 299, 391, 453, 671, 790
DpnI	GATC	2 cut(s)	208, 618
DpnII	GATC	2 cut(s)	206, 616
DraI	TTTAAA	2 cut(s)	432, 705
Eam1104I	CTCTTC	4 cut(s)	242, 584, 589, 870
EarI	CTCTTC	4 cut(s)	242, 584, 589, 870
Eco130I	CCWWGG	2 cut(s)	383, 751
Eco147I	AGGCCT	2 cut(s)	84, 274
Eco47I	GGWCC	2 cut(s)	77, 387
Eco81I	CCTNAGG	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	79, 419
EcoT14I	CCWWGG	2 cut(s)	383, 751
EcoT22I	ATGCAT	1 cut(s)	904
ErhI	CCWWGG	2 cut(s)	383, 751
FaeI	CATG	4 cut(s)	270, 387, 755, 767
FaqI	GGGAC	1 cut(s)	931
FatI	CATG	4 cut(s)	266, 383, 751, 763
Fnu4HI	GCNGC	2 cut(s)	67, 813
FokI	GGATG	3 cut(s)	581, 619, 634
Fsp4HI	GCNGC	2 cut(s)	67, 813
FspBI	CTAG	4 cut(s)	15, 491, 921, 935
GluI	GCNGC	2 cut(s)	67, 813
GsaI	CCCAGC	1 cut(s)	918
HaeIII	GGCC	4 cut(s)	84, 144, 274, 419
Hin1II	CATG	4 cut(s)	270, 387, 755, 767
HinfI	GANTC	2 cut(s)	263, 295
HphI	GGTGA	2 cut(s)	752, 950
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	4 cut(s)	196, 211, 606, 684
Hpy188III	TCNNGA	2 cut(s)	393, 551
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	295, 882
HpyCH4III	ACNGT	3 cut(s)	565, 688, 842
HpyCH4IV	ACGT	1 cut(s)	543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	6 cut(s)	291, 299, 391, 453, 671, 790
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	4 cut(s)	270, 387, 755, 767
Kzo9I	GATC	2 cut(s)	206, 616
LguI	GCTCTTC	3 cut(s)	584, 589, 870
LmnI	GCTCC	2 cut(s)	304, 929
Lsp1109I	GCAGC	2 cut(s)	78, 824
LweI	GCATC	4 cut(s)	484, 559, 839, 889
MaeI	CTAG	4 cut(s)	15, 491, 921, 935
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	3 cut(s)	539, 818, 938
MalI	GATC	2 cut(s)	208, 618
MboI	GATC	2 cut(s)	206, 616
MboII	GAAGA	6 cut(s)	118, 259, 362, 571, 606, 887
MfeI	CAATTG	1 cut(s)	657
MhlI	GDGCHC	2 cut(s)	363, 601
MluCI	AATT	9 cut(s)	52, 135, 309, 332, 351, 364, 435, 657, 865
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	174
Mph1103I	ATGCAT	1 cut(s)	904
MseI	TTAA	5 cut(s)	231, 431, 636, 704, 861
MslI	CAYNNNNRTG	1 cut(s)	750
MspR9I	CCNGG	2 cut(s)	81, 421
MunI	CAATTG	1 cut(s)	657
Mva1269I	GAATGC	2 cut(s)	332, 756
MvaI	CCWGG	2 cut(s)	81, 421
MwoI	GCNNNNNNNGC	1 cut(s)	313
NcoI	CCATGG	2 cut(s)	383, 751
NdeII	GATC	2 cut(s)	206, 616
NlaIII	CATG	4 cut(s)	270, 387, 755, 767
NlaIV	GGNNCC	2 cut(s)	746, 839
NmuCI	GTSAC	1 cut(s)	938
NsiI	ATGCAT	1 cut(s)	904
PceI	AGGCCT	2 cut(s)	84, 274
PciSI	GCTCTTC	3 cut(s)	584, 589, 870
PctI	GAATGC	2 cut(s)	332, 756
PfeI	GAWTC	1 cut(s)	295
PflFI	GACNNNGTC	1 cut(s)	30
PkrI	GCNGC	2 cut(s)	68, 814
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	79, 419
PspFI	CCCAGC	1 cut(s)	914
PspGI	CCWGG	2 cut(s)	79, 419
PspN4I	GGNNCC	2 cut(s)	746, 839
PspPI	GGNCC	2 cut(s)	77, 387
PsyI	GACNNNGTC	1 cut(s)	30
RsaI	GTAC	2 cut(s)	97, 225
RsaNI	GTAC	2 cut(s)	96, 224
RseI	CAYNNNNRTG	1 cut(s)	750
SapI	GCTCTTC	3 cut(s)	584, 589, 870
SaqAI	TTAA	5 cut(s)	231, 431, 636, 704, 861
SatI	GCNGC	2 cut(s)	67, 813
Sau3AI	GATC	2 cut(s)	206, 616
Sau96I	GGNCC	2 cut(s)	77, 387
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	2 cut(s)	81, 421
SduI	GDGCHC	2 cut(s)	363, 601
SfaNI	GCATC	4 cut(s)	484, 559, 839, 889
SinI	GGWCC	2 cut(s)	77, 387
SmiMI	CAYNNNNRTG	1 cut(s)	750
SmlI	CTYRAG	2 cut(s)	512, 928
SmoI	CTYRAG	2 cut(s)	512, 928
Sse9I	AATT	9 cut(s)	52, 135, 309, 332, 351, 364, 435, 657, 865
SseBI	AGGCCT	2 cut(s)	84, 274
SsiI	CCGC	1 cut(s)	769
SspMI	CTAG	4 cut(s)	15, 491, 921, 935
StuI	AGGCCT	2 cut(s)	84, 274
StyD4I	CCNGG	2 cut(s)	79, 419
StyI	CCWWGG	2 cut(s)	383, 751
TaaI	ACNGT	3 cut(s)	565, 688, 842
TaiI	ACGT	1 cut(s)	546
TasI	AATT	9 cut(s)	52, 135, 309, 332, 351, 364, 435, 657, 865
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	5 cut(s)	231, 431, 636, 704, 861
Tru9I	TTAA	5 cut(s)	231, 431, 636, 704, 861
TseFI	GTSAC	1 cut(s)	938
TseI	GCWGC	2 cut(s)	66, 812
Tsp45I	GTSAC	1 cut(s)	938
TspDTI	ATGAA	4 cut(s)	118, 571, 858, 869
Tth111I	GACNNNGTC	1 cut(s)	30
VneI	GTGCAC	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	77, 387
XapI	RAATTY	2 cut(s)	309, 865
XspI	CTAG	4 cut(s)	15, 491, 921, 935
Zsp2I	ATGCAT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.