Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0018352

Physical Location & Seq

Genomic Coordinates Forward (+)

12379969 .. 12381051

Gene Structure 1083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0140500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAAATCGAAGGAAGAAGCGAAGTAAAGGTAAGAAGCACTTCTCTTACTGAGGATGTTTTAGTAGAAATACTGTCAAGATTATCAGTGAAGTCTTTACTTAGGTTTATGTGTGTATCAAAGGAGTGGCATGCTCTCATAAAAAGCTCTTATTTCACTGCCATTCATCTTGAACGCTCGGATCGCAAACTTTCCCTTGTCTTTAAGAGTAAGTTAACTAAAGATGGCTATGAATTTGCAATGTCATTGCTTCGCAATGAGTCAACACCCAATTTGAGTTTGGATCTATCTTTCCTTGACTGTACAATCTGGTCGTTCAGAATTTCTATTAGAGTGGTTGGATCTAGTAATGGCTTAGTTTGTCTTAGTTTATTTCAGTATATAGTTGTATGGAACCCGGCCACAAAACAGTTTAGGTTTCTTCCTAATAAGACAGCTTATCATCGTCTACTAGGTTTTGAGTTCATTCAGGACATTAGTGATTATAAATTGGTCAGCATTCTCTTACATGATGACAACATATTGCGAGCTAAGGTCTTCACCCGAAGATCAAATTGTTTGAGAGAAGTCAAAAGCCACTGCTGTTCGCCACTTGGAGTTGCATGCGTAGGGTTTTCTTCAATCACCTTGAACGGGGTGCTGTATTCGCCTCTGCAGATAGAGCATCGAGTATCCCATTTGAATGACAAGACTTCTCGCGATGAGGTCTTCCATGTGATACCATTACCAGAGAGCATTAGTCGAACAAGTGCACTCTTTTCATGGAAAAATTCATTGGCATTTCTAGGAGGTCATGAACAAGAACCAGACTGTGAGCTTTGGATGATGACTGAAGAGCCTTCTGCTACTACACGAATGCCTTGGGTTAAACAGCTTATCCTCAAACCCTCATCACTGTCAAGATATATCTTTGGATCTTGGAAAGATGAATGTCTTTTATGGAGAGATACGAATGATGAAGACCTGCATTTTTACGATCCTACGAGCCAGAAATTGACAAAGCTTCCACAACATGATCAAACACATGGTTACAGATATGATCAAGCAATCAACTATGTGGAGAGCCTAGTTTCAGTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

360

Amino Acids

41.53

Weight (kDa)

7.17

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 52	1.3e-10	F-box domain
F-box-like	PF12937	19 - 50	6.4e-07	F-box-like
FBA_1	PF07734	89 - 359	3.2e-13	F-box associated beta propeller domain
FBA_3	PF08268	108 - 298	9.7e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018352)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17020
rosa_chinensis	RchiOBHm_Chr2g0107171 RchiOBHm_Chr2g0107181
rosa_laevigata	RLG00000017557
rosa_multiflora	Rmu_sc0002945.1_g000016
rosa_roxburghii	Rroxscaffold_2G00136570
rosa_rugosa	Rorug02G0140500
rosa_samantha	Rh2BG203200 Rh2DG198600
rosa_wichuraiana	Rw2G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
Acc36I	ACCTGC	1 cut(s)	972
AccI	GTMKAC	2 cut(s)	448, 1077
AccII	CGCG	1 cut(s)	699
AclWI	GGATC	5 cut(s)	189, 291, 349, 922, 971
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	3 cut(s)	233, 321, 769
AcuI	CTGAAG	1 cut(s)	852
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	633
AgsI	TTSAA	4 cut(s)	173, 621, 631, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	758, 790
AluBI	AGCT	6 cut(s)	147, 437, 530, 817, 874, 1003
AluI	AGCT	6 cut(s)	147, 437, 530, 817, 874, 1003
Alw21I	GWGCWC	1 cut(s)	754
Alw44I	GTGCAC	1 cut(s)	750
AlwI	GGATC	5 cut(s)	189, 291, 349, 922, 971
AoxI	GGCC	1 cut(s)	399
ApaLI	GTGCAC	1 cut(s)	750
ApoI	RAATTY	3 cut(s)	233, 321, 769
Asp700I	GAANNNNTTC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	2 cut(s)	532, 616
BaeGI	GKGCMC	1 cut(s)	754
BbsI	GAAGAC	3 cut(s)	529, 700, 966
Bbv12I	GWGCWC	1 cut(s)	754
BccI	CCATC	1 cut(s)	218
BciVI	GTATCC	1 cut(s)	682
BclI	TGATCA	2 cut(s)	1015, 1039
BcnI	CCSGG	1 cut(s)	398
BfaI	CTAG	4 cut(s)	345, 452, 785, 1067
BfmI	CTRYAG	1 cut(s)	653
BfuAI	ACCTGC	1 cut(s)	972
BfuI	GTATCC	1 cut(s)	682
Bme1390I	CCNGG	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	1 cut(s)	673
BpiI	GAAGAC	3 cut(s)	529, 700, 966
Bpu10I	CCTNAGC	1 cut(s)	531
BpuMI	CCSGG	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	860
Bsc4I	CCNNNNNNNGG	1 cut(s)	633
Bse3DI	GCAATG	3 cut(s)	245, 246, 262
BseDI	CCNNGG	1 cut(s)	860
BseGI	GGATG	2 cut(s)	61, 828
BseLI	CCNNNNNNNGG	1 cut(s)	633
BseMI	GCAATG	3 cut(s)	245, 246, 262
BseMII	CTCAG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	754
Bsh1236I	CGCG	1 cut(s)	699
BshFI	GGCC	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	754
BsiSI	CCGG	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	633
BsmI	GAATGC	2 cut(s)	498, 861
BsnI	GGCC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	754
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	8 cut(s)	181, 283, 341, 548, 914, 976, 1015, 1039
Bsp68I	TCGCGA	1 cut(s)	699
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	699
BspHI	TCATGA	1 cut(s)	793
BspLI	GGNNCC	1 cut(s)	395
BspMAI	CTGCAG	1 cut(s)	657
BspMI	ACCTGC	1 cut(s)	972
BspPI	GGATC	5 cut(s)	189, 291, 349, 922, 971
BspQI	GCTCTTC	1 cut(s)	828
BsrDI	GCAATG	3 cut(s)	245, 246, 262
BsrGI	TGTACA	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	860
BssMI	GATC	8 cut(s)	181, 283, 341, 548, 914, 976, 1015, 1039
BssT1I	CCWWGG	1 cut(s)	860
Bst4CI	ACNGT	5 cut(s)	75, 302, 411, 812, 897
Bst6I	CTCTTC	1 cut(s)	828
BstAUI	TGTACA	1 cut(s)	302
BstC8I	GCNNGC	3 cut(s)	132, 528, 604
BstDEI	CTNAG	5 cut(s)	51, 101, 355, 365, 531
BstF5I	GGATG	2 cut(s)	61, 828
BstFNI	CGCG	1 cut(s)	699
BstKTI	GATC	8 cut(s)	184, 286, 344, 551, 917, 979, 1018, 1042
BstMBI	GATC	8 cut(s)	181, 283, 341, 548, 914, 976, 1015, 1039
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 646, 661
BstNSI	RCATGY	2 cut(s)	134, 606
BstSCI	CCNGG	1 cut(s)	396
BstSFI	CTRYAG	1 cut(s)	653
BstSLI	GKGCMC	1 cut(s)	754
BstUI	CGCG	1 cut(s)	699
BstV2I	GAAGAC	3 cut(s)	529, 700, 966
BstX2I	RGATCY	3 cut(s)	283, 341, 914
BstYI	RGATCY	3 cut(s)	283, 341, 914
BsuI	GTATCC	1 cut(s)	682
BsuRI	GGCC	1 cut(s)	401
BtgZI	GCGATG	1 cut(s)	714
BtsCI	GGATG	2 cut(s)	61, 828
BtsI	GCAGTG	2 cut(s)	156, 577
BtsIMutI	CAGTG	4 cut(s)	93, 156, 577, 893
BtuMI	TCGCGA	1 cut(s)	699
BveI	ACCTGC	1 cut(s)	972
Cac8I	GCNNGC	3 cut(s)	132, 528, 604
CciI	TCATGA	1 cut(s)	793
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	8 cut(s)	131, 509, 603, 713, 762, 794, 1013, 1025
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	5 cut(s)	51, 101, 355, 365, 531
DpnI	GATC	8 cut(s)	183, 285, 343, 550, 916, 978, 1017, 1041
DpnII	GATC	8 cut(s)	181, 283, 341, 548, 914, 976, 1015, 1039
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
Eco130I	CCWWGG	1 cut(s)	860
Eco57I	CTGAAG	1 cut(s)	852
EcoT14I	CCWWGG	1 cut(s)	860
ErhI	CCWWGG	1 cut(s)	860
FaeI	CATG	8 cut(s)	134, 512, 606, 716, 765, 797, 1016, 1028
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FatI	CATG	8 cut(s)	130, 508, 602, 712, 761, 793, 1012, 1024
FbaI	TGATCA	2 cut(s)	1015, 1039
FblI	GTMKAC	2 cut(s)	448, 1077
FokI	GGATG	2 cut(s)	68, 835
FspBI	CTAG	4 cut(s)	345, 452, 785, 1067
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	1 cut(s)	398
Hin1II	CATG	8 cut(s)	134, 512, 606, 716, 765, 797, 1016, 1028
HincII	GTYRAC	2 cut(s)	216, 264
HindII	GTYRAC	2 cut(s)	216, 264
HindIII	AAGCTT	1 cut(s)	1001
HinfI	GANTC	1 cut(s)	260
HpaI	GTTAAC	1 cut(s)	216
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	2 cut(s)	532, 616
Hpy166II	GTNNAC	5 cut(s)	216, 264, 449, 752, 1078
Hpy188I	TCNGA	2 cut(s)	181, 320
Hpy188III	TCNNGA	6 cut(s)	78, 170, 470, 698, 794, 900
Hpy8I	GTNNAC	5 cut(s)	216, 264, 449, 752, 1078
HpyAV	CCTTC	2 cut(s)	5, 849
HpyCH4III	ACNGT	5 cut(s)	75, 302, 411, 812, 897
HpyCH4V	TGCA	5 cut(s)	239, 602, 655, 752, 967
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 646, 661
HpyF3I	CTNAG	5 cut(s)	51, 101, 355, 365, 531
Hsp92II	CATG	8 cut(s)	134, 512, 606, 716, 765, 797, 1016, 1028
Ksp22I	TGATCA	2 cut(s)	1015, 1039
KspAI	GTTAAC	1 cut(s)	216
Kzo9I	GATC	8 cut(s)	181, 283, 341, 548, 914, 976, 1015, 1039
LguI	GCTCTTC	1 cut(s)	828
LpnPI	CCDG	7 cut(s)	295, 411, 455, 741, 819, 977, 1001
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	4 cut(s)	345, 452, 785, 1067
MaeIII	GTNAC	1 cut(s)	1028
MalI	GATC	8 cut(s)	183, 285, 343, 550, 916, 978, 1017, 1041
MboI	GATC	8 cut(s)	181, 283, 341, 548, 914, 976, 1015, 1039
MboII	GAAGA	8 cut(s)	27, 413, 529, 558, 609, 700, 845, 971
MflI	RGATCY	3 cut(s)	283, 341, 914
MhlI	GDGCHC	1 cut(s)	754
MluCI	AATT	7 cut(s)	233, 271, 321, 488, 553, 769, 992
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	6 cut(s)	46, 660, 697, 782, 890, 898
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	3 cut(s)	204, 215, 867
MslI	CAYNNNNRTG	1 cut(s)	681
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	398
Mva1269I	GAATGC	2 cut(s)	498, 861
MvnI	CGCG	1 cut(s)	699
MwoI	GCNNNNNNNGC	3 cut(s)	183, 646, 661
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	8 cut(s)	181, 283, 341, 548, 914, 976, 1015, 1039
NlaIII	CATG	8 cut(s)	134, 512, 606, 716, 765, 797, 1016, 1028
NlaIV	GGNNCC	1 cut(s)	395
NruI	TCGCGA	1 cut(s)	699
NspI	RCATGY	2 cut(s)	134, 606
PaeI	GCATGC	2 cut(s)	134, 606
PagI	TCATGA	1 cut(s)	793
PciSI	GCTCTTC	1 cut(s)	828
PctI	GAATGC	2 cut(s)	498, 861
PdmI	GAANNNNTTC	1 cut(s)	40
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PsiI	TTATAA	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	657
PsuI	RGATCY	3 cut(s)	283, 341, 914
RruI	TCGCGA	1 cut(s)	699
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
RseI	CAYNNNNRTG	1 cut(s)	681
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	3 cut(s)	204, 215, 867
Sau3AI	GATC	8 cut(s)	181, 283, 341, 548, 914, 976, 1015, 1039
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	398
SduI	GDGCHC	1 cut(s)	754
SfaNI	GCATC	1 cut(s)	673
SfcI	CTRYAG	1 cut(s)	653
SmiMI	CAYNNNNRTG	1 cut(s)	681
SphI	GCATGC	2 cut(s)	134, 606
Sse9I	AATT	7 cut(s)	233, 271, 321, 488, 553, 769, 992
SspMI	CTAG	4 cut(s)	345, 452, 785, 1067
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	860
TaaI	ACNGT	5 cut(s)	75, 302, 411, 812, 897
TaqI	TCGA	3 cut(s)	9, 667, 742
TasI	AATT	7 cut(s)	233, 271, 321, 488, 553, 769, 992
TatI	WGTACW	1 cut(s)	302
Tru1I	TTAA	3 cut(s)	204, 215, 867
Tru9I	TTAA	3 cut(s)	204, 215, 867
TscAI	CASTG	4 cut(s)	93, 163, 584, 900
TspDTI	ATGAA	8 cut(s)	155, 246, 454, 750, 762, 810, 942, 972
TspRI	CASTG	4 cut(s)	93, 163, 584, 900
VneI	GTGCAC	1 cut(s)	750
XapI	RAATTY	3 cut(s)	233, 321, 769
XceI	RCATGY	2 cut(s)	134, 606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XmiI	GTMKAC	2 cut(s)	448, 1077
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	4 cut(s)	345, 452, 785, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.