Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018352

Physical Location & Seq

Genomic Coordinates Reverse (-)

18243433 .. 18245817

Gene Structure 2385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017557

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCTGTGGACTAATGAACTCGCTTTGACATGTTCAGGTGCTAGTTTTTGCTATCATTCCAGAACTGAACGACCTGAGGGTTTTAAAAGCAACAAAGTCATTGAATTTCATATTTATCTTTCAATATGTGCTGAGGTTTCTTCAGATTTGCTTCTTGTTGAAAAAAGATCTTCTGGTATCCTGGCTAAATCTACATGGGCTAATCTCTTCTTTTTTATGCTGGCCAGCATGTCATTGGAGCGCTTTGGTACTTGTTTTCGGAAAGATACAATACGACATCTTGGCCTGGATTTATTTAACAATTGTCCAGCGTTTGACAAATGGGATACGCAACTGCTAGATGCAGTGTGTGATAGTCTCAAGCCAGTAATCTATACAGAGGAAAGTTACATTTTTCAGGAGAGTGGAACTGTGGATGCAATGCTCTTCATAGCACAAAGAAGGTTAATGAGACTGACAAGTTACGGTGCAACAACTGAGGCATTCTTGTACAGATATCTCGGCTATGGTGACTTCTGTGGTGAAGAGCTCATCGGATGGGCGTTTGATCCCCACTCGTCATCTATTAAACTTCCCTCATCCATCGCAACTGTCCAGTCTCTAAGTAAAGTTCTGGCACTTGTTTTAAAAGCAGATGACTTGAAGCTCATAGCCTCCCAGTTCTGGCACCTTCATGGCATTCACCATGTCCGCAACACTTTCAGGTTTTACTCAGGTCAATGGAGACTTTGGGCAGCTTGTTACATACAAGCATCGTGTCGCCGTTATTGCAAGATGAAACTTAAAAAGTCTTTGGAAGAGCAGAATGGAAGGTTGCAACATGCACTGGCAAAGGCTGGGACTAGTTCCTCAAGTCTAGGTGACACCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

291

Amino Acids

32.98

Weight (kDa)

8.47

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018352)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17020
rosa_chinensis	RchiOBHm_Chr2g0107171 RchiOBHm_Chr2g0107181
rosa_laevigata	RLG00000017557
rosa_multiflora	Rmu_sc0002945.1_g000016
rosa_roxburghii	Rroxscaffold_2G00136570
rosa_rugosa	Rorug02G0140500
rosa_samantha	Rh2BG203200 Rh2DG198600
rosa_wichuraiana	Rw2G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	666
AciI	CCGC	1 cut(s)	691
AclWI	GGATC	1 cut(s)	542
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	2 cut(s)	250, 491
AfeI	AGCGCT	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	663
AflIII	ACRYGT	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	104, 123, 161, 643
AhlI	ACTAGT	1 cut(s)	842
AjnI	CCWGG	2 cut(s)	180, 285
AluBI	AGCT	3 cut(s)	529, 646, 737
AluI	AGCT	3 cut(s)	529, 646, 737
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	4 cut(s)	362, 445, 603, 718
AlwI	GGATC	1 cut(s)	542
Aor51HI	AGCGCT	1 cut(s)	242
AoxI	GGCC	2 cut(s)	222, 283
ApeKI	GCWGC	1 cut(s)	734
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	243
AsuHPI	GGTGA	4 cut(s)	521, 533, 674, 872
AxyI	CCTNAGG	1 cut(s)	75
BalI	TGGCCA	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	666
BanII	GRGCYC	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	531
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	746
BccI	CCATC	2 cut(s)	531, 590
BceAI	ACGGC	1 cut(s)	747
BciT130I	CCWGG	2 cut(s)	182, 287
BciVI	GTATCC	2 cut(s)	188, 319
BcoDI	GTCTC	4 cut(s)	362, 445, 603, 718
BcuI	ACTAGT	1 cut(s)	842
BfaI	CTAG	4 cut(s)	42, 338, 843, 857
BfoI	RGCGCY	1 cut(s)	244
BfuI	GTATCC	2 cut(s)	188, 319
BglII	AGATCT	1 cut(s)	167
BisI	GCNGC	1 cut(s)	735
BlsI	GCNGC	1 cut(s)	736
Bme1390I	CCNGG	2 cut(s)	182, 287
BmiI	GGNNCC	1 cut(s)	668
BmrFI	CCNGG	2 cut(s)	182, 287
BmrI	ACTGGG	1 cut(s)	652
BmsI	GCATC	3 cut(s)	331, 406, 761
BmuI	ACTGGG	1 cut(s)	652
Bpu10I	CCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	2 cut(s)	344, 835
Bsc4I	CCNNNNNNNGG	1 cut(s)	663
Bse1I	ACTGG	4 cut(s)	365, 595, 658, 831
Bse21I	CCTNAGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	182, 287
BseGI	GGATG	3 cut(s)	421, 542, 578
BseLI	CCNNNNNNNGG	1 cut(s)	663
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	4 cut(s)	66, 123, 468, 726
BseNI	ACTGG	4 cut(s)	365, 595, 658, 831
BseXI	GCAGC	1 cut(s)	746
BseYI	CCCAGC	1 cut(s)	836
BshFI	GGCC	2 cut(s)	224, 285
BshNI	GGYRCC	1 cut(s)	666
BsiHKAI	GWGCWC	1 cut(s)	531
BslFI	GGGAC	1 cut(s)	853
BslI	CCNNNNNNNGG	1 cut(s)	663
BsmAI	GTCTC	4 cut(s)	362, 445, 603, 718
BsmFI	GGGAC	1 cut(s)	853
BsmI	GAATGC	2 cut(s)	482, 678
BsnI	GGCC	2 cut(s)	224, 285
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	2 cut(s)	167, 547
BspACI	CCGC	1 cut(s)	691
BspANI	GGCC	2 cut(s)	224, 285
BspCNI	CTCAG	4 cut(s)	67, 124, 469, 725
BspLI	GGNNCC	1 cut(s)	668
BspPI	GGATC	1 cut(s)	542
BspQI	GCTCTTC	3 cut(s)	431, 519, 792
BspT107I	GGYRCC	1 cut(s)	666
BsrDI	GCAATG	1 cut(s)	426
BsrGI	TGTACA	1 cut(s)	489
BsrI	ACTGG	4 cut(s)	365, 595, 658, 831
BssMI	GATC	2 cut(s)	167, 547
Bst2UI	CCWGG	2 cut(s)	182, 287
Bst4CI	ACNGT	3 cut(s)	412, 467, 592
Bst6I	CTCTTC	4 cut(s)	212, 431, 519, 792
BstAUI	TGTACA	1 cut(s)	489
BstC8I	GCNNGC	2 cut(s)	222, 226
BstDEI	CTNAG	5 cut(s)	75, 132, 477, 602, 712
BstF5I	GGATG	3 cut(s)	421, 542, 578
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	2 cut(s)	170, 550
BstMAI	GTCTC	4 cut(s)	362, 445, 603, 718
BstMBI	GATC	2 cut(s)	167, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	768
BstNI	CCWGG	2 cut(s)	182, 287
BstNSI	RCATGY	3 cut(s)	33, 232, 824
BstSCI	CCNGG	2 cut(s)	180, 285
BstV1I	GCAGC	1 cut(s)	746
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
Bsu36I	CCTNAGG	1 cut(s)	75
BsuI	GTATCC	2 cut(s)	188, 319
BsuRI	GGCC	2 cut(s)	224, 285
BtgZI	GCGATG	1 cut(s)	568
BtsCI	GGATG	3 cut(s)	421, 542, 578
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	351, 824
Cac8I	GCNNGC	2 cut(s)	222, 226
CfoI	GCGC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	249, 490
CviAII	CATG	6 cut(s)	30, 195, 229, 674, 686, 821
CviQI	GTAC	2 cut(s)	249, 490
DdeI	CTNAG	5 cut(s)	75, 132, 477, 602, 712
DpnI	GATC	2 cut(s)	169, 549
DpnII	GATC	2 cut(s)	167, 547
DraI	TTTAAA	2 cut(s)	85, 627
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	4 cut(s)	212, 431, 519, 792
EarI	CTCTTC	4 cut(s)	212, 431, 519, 792
Ecl136II	GAGCTC	1 cut(s)	529
Eco24I	GRGCYC	1 cut(s)	531
Eco32I	GATATC	1 cut(s)	497
Eco47III	AGCGCT	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	126
Eco81I	CCTNAGG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	529
EcoRII	CCWGG	2 cut(s)	180, 285
EcoRV	GATATC	1 cut(s)	497
EcoT38I	GRGCYC	1 cut(s)	531
FaeI	CATG	6 cut(s)	33, 198, 232, 677, 689, 824
FaqI	GGGAC	1 cut(s)	853
FatI	CATG	6 cut(s)	29, 194, 228, 673, 685, 820
Fnu4HI	GCNGC	1 cut(s)	735
FokI	GGATG	3 cut(s)	428, 549, 565
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	1 cut(s)	735
FspBI	CTAG	4 cut(s)	42, 338, 843, 857
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	1 cut(s)	735
GsaI	CCCAGC	1 cut(s)	840
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	2 cut(s)	224, 285
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	6 cut(s)	33, 198, 232, 677, 689, 824
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HphI	GGTGA	4 cut(s)	521, 533, 674, 872
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	3 cut(s)	145, 261, 536
Hpy188III	TCNNGA	2 cut(s)	60, 398
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	3 cut(s)	435, 680, 804
HpyCH4III	ACNGT	3 cut(s)	412, 467, 592
HpyCH4V	TGCA	6 cut(s)	344, 419, 470, 771, 817, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	768
HpyF3I	CTNAG	5 cut(s)	75, 132, 477, 602, 712
Hsp92II	CATG	6 cut(s)	33, 198, 232, 677, 689, 824
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	167, 547
LguI	GCTCTTC	3 cut(s)	431, 519, 792
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	1 cut(s)	746
LweI	GCATC	3 cut(s)	331, 406, 761
MaeI	CTAG	4 cut(s)	42, 338, 843, 857
MaeIII	GTNAC	5 cut(s)	386, 461, 509, 740, 860
MalI	GATC	2 cut(s)	169, 549
MboI	GATC	2 cut(s)	167, 547
MboII	GAAGA	6 cut(s)	132, 162, 199, 418, 536, 809
MfeI	CAATTG	1 cut(s)	301
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	531
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	2 cut(s)	104, 301
MluNI	TGGCCA	1 cut(s)	224
MnlI	CCTC	7 cut(s)	70, 127, 373, 472, 586, 664, 859
Mox20I	TGGCCA	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	6 cut(s)	84, 297, 446, 567, 626, 783
MslI	CAYNNNNRTG	1 cut(s)	672
Msp20I	TGGCCA	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	182, 287
MunI	CAATTG	1 cut(s)	301
Mva1269I	GAATGC	2 cut(s)	482, 678
MvaI	CCWGG	2 cut(s)	182, 287
MwoI	GCNNNNNNNGC	1 cut(s)	768
NdeII	GATC	2 cut(s)	167, 547
NlaIII	CATG	6 cut(s)	33, 198, 232, 677, 689, 824
NlaIV	GGNNCC	1 cut(s)	668
NmeAIII	GCCGAG	1 cut(s)	480
NmuCI	GTSAC	2 cut(s)	509, 860
NspI	RCATGY	3 cut(s)	33, 232, 824
PciI	ACATGT	1 cut(s)	29
PciSI	GCTCTTC	3 cut(s)	431, 519, 792
PctI	GAATGC	2 cut(s)	482, 678
PkrI	GCNGC	1 cut(s)	736
PscI	ACATGT	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	531
Psp6I	CCWGG	2 cut(s)	180, 285
PspFI	CCCAGC	1 cut(s)	836
PspGI	CCWGG	2 cut(s)	180, 285
PspN4I	GGNNCC	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	167
RsaI	GTAC	2 cut(s)	250, 491
RsaNI	GTAC	2 cut(s)	249, 490
RseI	CAYNNNNRTG	1 cut(s)	672
SacI	GAGCTC	1 cut(s)	531
SapI	GCTCTTC	3 cut(s)	431, 519, 792
SaqAI	TTAA	6 cut(s)	84, 297, 446, 567, 626, 783
SatI	GCNGC	1 cut(s)	735
Sau3AI	GATC	2 cut(s)	167, 547
ScrFI	CCNGG	2 cut(s)	182, 287
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	3 cut(s)	331, 406, 761
SmiMI	CAYNNNNRTG	1 cut(s)	672
SmlI	CTYRAG	2 cut(s)	359, 850
SmoI	CTYRAG	2 cut(s)	359, 850
SpeI	ACTAGT	1 cut(s)	842
Sse9I	AATT	2 cut(s)	104, 301
SsiI	CCGC	1 cut(s)	691
SspMI	CTAG	4 cut(s)	42, 338, 843, 857
SstI	GAGCTC	1 cut(s)	531
StyD4I	CCNGG	2 cut(s)	180, 285
TaaI	ACNGT	3 cut(s)	412, 467, 592
TasI	AATT	2 cut(s)	104, 301
TatI	WGTACW	1 cut(s)	489
Tru1I	TTAA	6 cut(s)	84, 297, 446, 567, 626, 783
Tru9I	TTAA	6 cut(s)	84, 297, 446, 567, 626, 783
TscAI	CASTG	2 cut(s)	351, 831
TseFI	GTSAC	2 cut(s)	509, 860
TseI	GCWGC	1 cut(s)	734
Tsp45I	GTSAC	2 cut(s)	509, 860
TspDTI	ATGAA	5 cut(s)	30, 98, 418, 662, 791
TspRI	CASTG	2 cut(s)	351, 831
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	3 cut(s)	33, 232, 824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XspI	CTAG	4 cut(s)	42, 338, 843, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.