Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018352

Physical Location & Seq

Genomic Coordinates Reverse (-)

18524208 .. 18525196

Gene Structure 989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48120

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGACCTCAGGAAAGATACAATACGACATCTTGGCCTGGATTTATTTAAAAATTGTCCAGCGTTTGACAAATGGGATACGCAACTGCTGGATGCAATGTGTGATAGTCTCAAGCCAGTAATCTATACAGAGGAAAGCTACATTTTTCAAGAGAGTGGAACTGTGGATGCAATGCTCTTCATAGCACGAGGAAGGTTAATGAGACTGACAAGTTACGGTGCAACAACTGAGGCATTCTTGTACAGATATCTCGGCTATGGTGACTTCTGTGGTGAAGAGCTCATCGGATGGGCGTTTGATCCCCACTCGTCATCTATTAAACTTCCCTCATCCGTCGCAACTGTCCAGTCTCTAAGTAAAGTTCTGGCACTTGTTTTAAAAGCAGATGACTTGAAGCTCATAGCCTCCCAGCTCCGGCACCTTCATGGCATTCACCATGTCCGCAACACTTTCAGGTTTTACTCAGGTCAATGGAGACGTTGGGCAGCTTGTTACATACAAGCATCGTGGCGCCGTTATTGCAAGATGAAACTTAAAAAGTCTTTGGAAGAGCAGAATGGAAGGTTGCAAGATGCACTGGCAAAGGCTGGGACTAGTTCCTCAAGTCTAGGTGACACCATAGAATGTCTGATCCTTTGCTACCAATGTACTATTTCCTGTACAGTTTTATGGTGCGCCAAAGCCTGTAAAGATTGCCTTTTCTTGAACTCAAACCCTGAATCCAGAGTCGCCTTGATACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

247

Amino Acids

28.05

Weight (kDa)

8.56

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018352)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17020
rosa_chinensis	RchiOBHm_Chr2g0107171 RchiOBHm_Chr2g0107181
rosa_laevigata	RLG00000017557
rosa_multiflora	Rmu_sc0002945.1_g000016
rosa_roxburghii	Rroxscaffold_2G00136570
rosa_rugosa	Rorug02G0140500
rosa_samantha	Rh2BG203200 Rh2DG198600
rosa_wichuraiana	Rw2G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	417, 510
AciI	CCGC	1 cut(s)	442
AclWI	GGATC	2 cut(s)	293, 625
AcyI	GRCGYC	1 cut(s)	511
AfaI	GTAC	3 cut(s)	242, 649, 661
AfiI	CCNNNNNNNGG	1 cut(s)	414
AgsI	TTSAA	3 cut(s)	149, 394, 706
AhlI	ACTAGT	1 cut(s)	593
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	5 cut(s)	138, 280, 397, 412, 488
AluI	AGCT	5 cut(s)	138, 280, 397, 412, 488
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	4 cut(s)	113, 196, 354, 469
AlwI	GGATC	2 cut(s)	293, 625
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	485
AspLEI	GCGC	2 cut(s)	513, 677
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	4 cut(s)	272, 284, 425, 623
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	8
BanI	GGYRCC	2 cut(s)	417, 510
BanII	GRGCYC	1 cut(s)	282
BauI	CACGAG	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	1 cut(s)	282
BceAI	ACGGC	1 cut(s)	498
BciT130I	CCWGG	1 cut(s)	38
BciVI	GTATCC	1 cut(s)	70
BcoDI	GTCTC	4 cut(s)	113, 196, 354, 469
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	2 cut(s)	594, 608
BfoI	RGCGCY	1 cut(s)	514
BfuI	GTATCC	1 cut(s)	70
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	419, 512
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	4 cut(s)	82, 157, 512, 562
BpuEI	CTTGAG	2 cut(s)	95, 586
BsaHI	GRCGYC	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse1I	ACTGG	3 cut(s)	116, 346, 582
Bse21I	CCTNAGG	1 cut(s)	8
Bse3DI	GCAATG	2 cut(s)	102, 177
BseBI	CCWGG	1 cut(s)	38
BseGI	GGATG	4 cut(s)	97, 172, 293, 329
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseMI	GCAATG	2 cut(s)	102, 177
BseMII	CTCAG	3 cut(s)	22, 219, 477
BseNI	ACTGG	3 cut(s)	116, 346, 582
BseXI	GCAGC	1 cut(s)	497
BseYI	CCCAGC	2 cut(s)	408, 587
BshFI	GGCC	1 cut(s)	36
BshNI	GGYRCC	2 cut(s)	417, 510
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	415
BslFI	GGGAC	1 cut(s)	604
BslI	CCNNNNNNNGG	1 cut(s)	414
BsmAI	GTCTC	4 cut(s)	113, 196, 354, 469
BsmBI	CGTCTC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	604
BsmI	GAATGC	2 cut(s)	233, 429
BsnI	GGCC	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp1407I	TGTACA	2 cut(s)	240, 659
Bsp143I	GATC	2 cut(s)	298, 630
BspACI	CCGC	1 cut(s)	442
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	3 cut(s)	21, 220, 476
BspLI	GGNNCC	2 cut(s)	419, 512
BspPI	GGATC	2 cut(s)	293, 625
BspQI	GCTCTTC	3 cut(s)	182, 270, 543
BspT107I	GGYRCC	2 cut(s)	417, 510
BsrDI	GCAATG	2 cut(s)	102, 177
BsrGI	TGTACA	2 cut(s)	240, 659
BsrI	ACTGG	3 cut(s)	116, 346, 582
BssMI	GATC	2 cut(s)	298, 630
BssNI	GRCGYC	1 cut(s)	511
BssSI	CACGAG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	4 cut(s)	163, 218, 343, 664
Bst6I	CTCTTC	3 cut(s)	182, 270, 543
BstACI	GRCGYC	1 cut(s)	511
BstAUI	TGTACA	2 cut(s)	240, 659
BstDEI	CTNAG	4 cut(s)	8, 228, 353, 463
BstF5I	GGATG	4 cut(s)	97, 172, 293, 329
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	2 cut(s)	513, 677
BstKTI	GATC	2 cut(s)	301, 633
BstMAI	GTCTC	4 cut(s)	113, 196, 354, 469
BstMBI	GATC	2 cut(s)	298, 630
BstMWI	GCNNNNNNNGC	1 cut(s)	519
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	497
Bsu36I	CCTNAGG	1 cut(s)	8
BsuI	GTATCC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	36
BtsCI	GGATG	4 cut(s)	97, 172, 293, 329
BtsIMutI	CAGTG	1 cut(s)	575
CfoI	GCGC	2 cut(s)	513, 677
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	241, 648, 660
CspCI	CAANNNNNGTGG	2 cut(s)	488, 523
CviAII	CATG	2 cut(s)	425, 437
CviQI	GTAC	3 cut(s)	241, 648, 660
DdeI	CTNAG	4 cut(s)	8, 228, 353, 463
DinI	GGCGCC	1 cut(s)	512
DpnI	GATC	2 cut(s)	300, 632
DpnII	GATC	2 cut(s)	298, 630
DraI	TTTAAA	2 cut(s)	49, 378
Eam1104I	CTCTTC	3 cut(s)	182, 270, 543
EarI	CTCTTC	3 cut(s)	182, 270, 543
Ecl136II	GAGCTC	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	282
Eco32I	GATATC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	280
Eco81I	CCTNAGG	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	282
EgeI	GGCGCC	1 cut(s)	512
EheI	GGCGCC	1 cut(s)	512
Esp3I	CGTCTC	1 cut(s)	469
FaeI	CATG	2 cut(s)	428, 440
FaiI	YATR	9 cut(s)	126, 182, 258, 401, 426, 438, 497, 620, 670
FalI	AAGNNNNNCTT	2 cut(s)	681, 713
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	2 cut(s)	424, 436
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	4 cut(s)	104, 179, 300, 316
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	2 cut(s)	594, 608
GlaI	GCGC	2 cut(s)	512, 676
GluI	GCNGC	1 cut(s)	486
GsaI	CCCAGC	2 cut(s)	412, 591
HaeII	RGCGCY	1 cut(s)	514
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	415
HhaI	GCGC	2 cut(s)	513, 677
Hin1I	GRCGYC	1 cut(s)	511
Hin1II	CATG	2 cut(s)	428, 440
Hin6I	GCGC	2 cut(s)	511, 675
HinP1I	GCGC	2 cut(s)	511, 675
HinfI	GANTC	2 cut(s)	719, 726
HpaII	CCGG	1 cut(s)	415
HphI	GGTGA	4 cut(s)	272, 284, 425, 623
Hpy188I	TCNGA	2 cut(s)	287, 630
Hpy188III	TCNNGA	4 cut(s)	10, 149, 703, 723
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	3 cut(s)	186, 431, 555
HpyCH4III	ACNGT	4 cut(s)	163, 218, 343, 664
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	6 cut(s)	95, 170, 221, 522, 568, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	519
HpyF3I	CTNAG	4 cut(s)	8, 228, 353, 463
HpySE526I	ACGT	1 cut(s)	478
Hsp92I	GRCGYC	1 cut(s)	511
Hsp92II	CATG	2 cut(s)	428, 440
HspAI	GCGC	2 cut(s)	511, 675
KasI	GGCGCC	1 cut(s)	510
Kzo9I	GATC	2 cut(s)	298, 630
LguI	GCTCTTC	3 cut(s)	182, 270, 543
LmnI	GCTCC	1 cut(s)	417
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	4 cut(s)	82, 157, 512, 562
MaeI	CTAG	2 cut(s)	594, 608
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	4 cut(s)	212, 260, 491, 611
MalI	GATC	2 cut(s)	300, 632
MboI	GATC	2 cut(s)	298, 630
MboII	GAAGA	3 cut(s)	169, 287, 560
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	1 cut(s)	52
Mly113I	GGCGCC	1 cut(s)	511
MlyI	GAGTC	1 cut(s)	735
MnlI	CCTC	7 cut(s)	17, 124, 182, 223, 337, 415, 610
MseI	TTAA	5 cut(s)	48, 197, 318, 377, 534
MslI	CAYNNNNRTG	1 cut(s)	423
MspI	CCGG	1 cut(s)	415
MspR9I	CCNGG	1 cut(s)	38
Mva1269I	GAATGC	2 cut(s)	233, 429
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	519
NarI	GGCGCC	1 cut(s)	511
NdeII	GATC	2 cut(s)	298, 630
NlaIII	CATG	2 cut(s)	428, 440
NlaIV	GGNNCC	2 cut(s)	419, 512
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	260, 611
PciSI	GCTCTTC	3 cut(s)	182, 270, 543
PctI	GAATGC	2 cut(s)	233, 429
PfeI	GAWTC	1 cut(s)	719
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	1 cut(s)	734
PluTI	GGCGCC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	734
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	36
PspFI	CCCAGC	2 cut(s)	408, 587
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	419, 512
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	3 cut(s)	242, 649, 661
RsaNI	GTAC	3 cut(s)	241, 648, 660
RseI	CAYNNNNRTG	1 cut(s)	423
SacI	GAGCTC	1 cut(s)	282
SapI	GCTCTTC	3 cut(s)	182, 270, 543
SaqAI	TTAA	5 cut(s)	48, 197, 318, 377, 534
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	2 cut(s)	298, 630
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	735
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	4 cut(s)	82, 157, 512, 562
SfoI	GGCGCC	1 cut(s)	512
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	2 cut(s)	110, 601
SmoI	CTYRAG	2 cut(s)	110, 601
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	442
SspDI	GGCGCC	1 cut(s)	510
SspMI	CTAG	2 cut(s)	594, 608
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	4 cut(s)	163, 218, 343, 664
TaiI	ACGT	1 cut(s)	481
TasI	AATT	1 cut(s)	52
TatI	WGTACW	3 cut(s)	240, 647, 659
TfiI	GAWTC	1 cut(s)	719
Tru1I	TTAA	5 cut(s)	48, 197, 318, 377, 534
Tru9I	TTAA	5 cut(s)	48, 197, 318, 377, 534
TscAI	CASTG	1 cut(s)	582
TseFI	GTSAC	2 cut(s)	260, 611
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	2 cut(s)	260, 611
TspDTI	ATGAA	3 cut(s)	169, 413, 542
TspGWI	ACGGA	1 cut(s)	322
TspRI	CASTG	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	2 cut(s)	594, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.