Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002945.1

Orthogroup ID

OG0018352

Physical Location & Seq

Genomic Coordinates Reverse (-)

69127 .. 69639

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002945.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgctcttcatagcacaaggaaggttaataagactgactagttacggtgcaacaactgaggcattcttgtacagatatctcggctatggtgacttctgtggtgaagagctcatcggatgggcgtttgatccccactcgtcatctattaaatttccctcatccattgcaactgtccagtctctaagtaaagttctggcacttgttttaaaagcagatgacttgaagctcatagcctcccagctccggcaccttcatggcattcaccatgtccgcaacactttcaggttttactcaggtcaatggagactttgggcagcttgttacatacaagcatcgtggcaccgttattgcaagatgaaacttaaaaagtctttggaagagcagaatggaaggttgcaagatgcactggcaaaggctgggactagttcctcaagtctgggtgacaccatatctgatcctttgctgccgatgtactatttcctgtacagttttatggtgcgccaaagcctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

170

Amino Acids

19.4

Weight (kDa)

9.4

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018352)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17020
rosa_chinensis	RchiOBHm_Chr2g0107171 RchiOBHm_Chr2g0107181
rosa_laevigata	RLG00000017557
rosa_multiflora	Rmu_sc0002945.1_g000016
rosa_roxburghii	Rroxscaffold_2G00136570
rosa_rugosa	Rorug02G0140500
rosa_samantha	Rh2BG203200 Rh2DG198600
rosa_wichuraiana	Rw2G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	246, 339
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	2 cut(s)	122, 449
AcsI	RAATTY	1 cut(s)	149
AfaI	GTAC	3 cut(s)	71, 473, 485
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	223
AhlI	ACTAGT	2 cut(s)	38, 422
AluBI	AGCT	4 cut(s)	109, 226, 241, 317
AluI	AGCT	4 cut(s)	109, 226, 241, 317
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	183, 298
AlwI	GGATC	2 cut(s)	122, 449
ApeKI	GCWGC	2 cut(s)	314, 463
ApoI	RAATTY	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	501
AsuHPI	GGTGA	4 cut(s)	101, 113, 254, 452
BanI	GGYRCC	2 cut(s)	246, 339
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	326, 450
BccI	CCATC	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	183, 298
BcuI	ACTAGT	2 cut(s)	38, 422
BfaI	CTAG	2 cut(s)	39, 423
BisI	GCNGC	2 cut(s)	315, 464
BlsI	GCNGC	2 cut(s)	316, 465
BmiI	GGNNCC	2 cut(s)	248, 341
BmsI	GCATC	2 cut(s)	341, 391
BpuEI	CTTGAG	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	2 cut(s)	175, 411
Bse3DI	GCAATG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	122, 158
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	48, 306
BseNI	ACTGG	2 cut(s)	175, 411
BseXI	GCAGC	2 cut(s)	326, 450
BseYI	CCCAGC	2 cut(s)	237, 416
BshNI	GGYRCC	2 cut(s)	246, 339
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	2 cut(s)	183, 298
BsmFI	GGGAC	1 cut(s)	433
BsmI	GAATGC	2 cut(s)	62, 258
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp1407I	TGTACA	2 cut(s)	69, 483
Bsp143I	GATC	2 cut(s)	127, 454
BspACI	CCGC	1 cut(s)	271
BspCNI	CTCAG	2 cut(s)	49, 305
BspLI	GGNNCC	2 cut(s)	248, 341
BspPI	GGATC	2 cut(s)	122, 449
BspQI	GCTCTTC	3 cut(s)	11, 99, 372
BspT107I	GGYRCC	2 cut(s)	246, 339
BsrDI	GCAATG	1 cut(s)	162
BsrGI	TGTACA	2 cut(s)	69, 483
BsrI	ACTGG	2 cut(s)	175, 411
BssMI	GATC	2 cut(s)	127, 454
Bst4CI	ACNGT	4 cut(s)	47, 172, 344, 488
Bst6I	CTCTTC	3 cut(s)	11, 99, 372
BstAUI	TGTACA	2 cut(s)	69, 483
BstDEI	CTNAG	3 cut(s)	57, 182, 292
BstF5I	GGATG	2 cut(s)	122, 158
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	2 cut(s)	130, 457
BstMAI	GTCTC	2 cut(s)	183, 298
BstMBI	GATC	2 cut(s)	127, 454
BstV1I	GCAGC	2 cut(s)	326, 450
BtsCI	GGATG	2 cut(s)	122, 158
BtsIMutI	CAGTG	1 cut(s)	404
CfoI	GCGC	1 cut(s)	501
Csp6I	GTAC	3 cut(s)	70, 472, 484
CspCI	CAANNNNNGTGG	2 cut(s)	317, 352
CviAII	CATG	2 cut(s)	254, 266
CviJI	RGCY	8 cut(s)	84, 109, 226, 233, 241, 317, 416, 507
CviKI_1	RGCY	8 cut(s)	84, 109, 226, 233, 241, 317, 416, 507
CviQI	GTAC	3 cut(s)	70, 472, 484
DdeI	CTNAG	3 cut(s)	57, 182, 292
DpnI	GATC	2 cut(s)	129, 456
DpnII	GATC	2 cut(s)	127, 454
DraI	TTTAAA	1 cut(s)	207
Eam1104I	CTCTTC	3 cut(s)	11, 99, 372
EarI	CTCTTC	3 cut(s)	11, 99, 372
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	2 cut(s)	257, 269
FaiI	YATR	8 cut(s)	11, 87, 230, 255, 267, 326, 449, 494
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	2 cut(s)	253, 265
Fnu4HI	GCNGC	2 cut(s)	315, 464
FokI	GGATG	2 cut(s)	129, 145
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	315, 464
FspBI	CTAG	2 cut(s)	39, 423
GlaI	GCGC	1 cut(s)	500
GluI	GCNGC	2 cut(s)	315, 464
GsaI	CCCAGC	2 cut(s)	241, 420
HapII	CCGG	1 cut(s)	244
HhaI	GCGC	1 cut(s)	501
Hin1II	CATG	2 cut(s)	257, 269
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	4 cut(s)	101, 113, 254, 452
Hpy188I	TCNGA	2 cut(s)	116, 454
HpyAV	CCTTC	3 cut(s)	15, 260, 384
HpyCH4III	ACNGT	4 cut(s)	47, 172, 344, 488
HpyCH4V	TGCA	5 cut(s)	50, 167, 351, 397, 404
HpyF3I	CTNAG	3 cut(s)	57, 182, 292
Hsp92II	CATG	2 cut(s)	257, 269
HspAI	GCGC	1 cut(s)	499
Kzo9I	GATC	2 cut(s)	127, 454
LguI	GCTCTTC	3 cut(s)	11, 99, 372
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	2 cut(s)	326, 450
LweI	GCATC	2 cut(s)	341, 391
MaeI	CTAG	2 cut(s)	39, 423
MaeIII	GTNAC	4 cut(s)	41, 89, 320, 440
MalI	GATC	2 cut(s)	129, 456
MboI	GATC	2 cut(s)	127, 454
MboII	GAAGA	2 cut(s)	116, 389
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	1 cut(s)	149
MnlI	CCTC	4 cut(s)	52, 166, 244, 439
MseI	TTAA	4 cut(s)	26, 147, 206, 363
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	1 cut(s)	244
Mva1269I	GAATGC	2 cut(s)	62, 258
NdeII	GATC	2 cut(s)	127, 454
NlaIII	CATG	2 cut(s)	257, 269
NlaIV	GGNNCC	2 cut(s)	248, 341
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	2 cut(s)	89, 440
PciSI	GCTCTTC	3 cut(s)	11, 99, 372
PctI	GAATGC	2 cut(s)	62, 258
PkrI	GCNGC	2 cut(s)	316, 465
Psp124BI	GAGCTC	1 cut(s)	111
PspFI	CCCAGC	2 cut(s)	237, 416
PspN4I	GGNNCC	2 cut(s)	248, 341
RsaI	GTAC	3 cut(s)	71, 473, 485
RsaNI	GTAC	3 cut(s)	70, 472, 484
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	111
SapI	GCTCTTC	3 cut(s)	11, 99, 372
SaqAI	TTAA	4 cut(s)	26, 147, 206, 363
SatI	GCNGC	2 cut(s)	315, 464
Sau3AI	GATC	2 cut(s)	127, 454
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	9 cut(s)	26, 111, 228, 243, 252, 287, 298, 319, 395
SfaNI	GCATC	2 cut(s)	341, 391
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
SpeI	ACTAGT	2 cut(s)	38, 422
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	1 cut(s)	271
SspMI	CTAG	2 cut(s)	39, 423
SstI	GAGCTC	1 cut(s)	111
TaaI	ACNGT	4 cut(s)	47, 172, 344, 488
TasI	AATT	1 cut(s)	149
TatI	WGTACW	3 cut(s)	69, 471, 483
Tru1I	TTAA	4 cut(s)	26, 147, 206, 363
Tru9I	TTAA	4 cut(s)	26, 147, 206, 363
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	2 cut(s)	89, 440
TseI	GCWGC	2 cut(s)	314, 463
Tsp45I	GTSAC	2 cut(s)	89, 440
TspDTI	ATGAA	2 cut(s)	242, 371
TspRI	CASTG	1 cut(s)	411
XapI	RAATTY	1 cut(s)	149
XspI	CTAG	2 cut(s)	39, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.