RchiOBHm_Chr2g0108541

ACT domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
19910187 .. 19914329
4143 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1425 bp
ATGGAAATAATTTACCAGCCCTATATCGACCCCGAGTACGAATGCCTCATCGAAAGAATCTACCCGCCGTGGGTTTGTATCGACAACGACACATGCAAAGATTGCACCCTCGTGAAGGTTGACAGTGCAAACAAGCACGGGATTTTACTGGAGATGGTCCAAGTTTTGACAGATCTTGATCTTGTTATTTCCAAATCTTATATCTCCTCTGATGGTGGATGGTTTATGGATGTGTTCCATGTGACGGATCAACTCGGCAACAAAATCACTGACGAGAGCATCATACTTTACATTCAGCAGGCACTTTGTGCTAAAAGGGGAGTGATTGCAAAAGAGGCAAGACTATGCCTAGGAAAAGAAGTGGCACCGGGAGCGAATGATTTAGCCCTAGAAATGACCACCAAGGACCGACCGGGCTTGATGTCCGAGATCTCCGCGGTCCTGGTTGAGCTCGGCTGCAACATAACTGCTGCCGTGGCTTGGACCCACAGCACCCGTGCGGCGAGTATCTTCTATGTCGAAGATGGGCTGGACGGAGGGCCCATCACGGACCCAATACGGCTAGCAAATGTCCAAGAGCAGCTAGAAAATGTAATTGAAGCCCATCACGAGGAGGGCGAGAAGAGGAGTGTGAGGCTGACTACCCCCGCGGTCGGACGGACCCACACAGAGCGGCGGCTCCACCAATTGATGTACGGGGACGATGACTACGAGATGTGTCGGGGTTGCGATGGCGGTGATAAAGGACACAAGAAGGGTTGTGATCGAACCCATGTGTCGATAGAGAGTTGCAAGGAGAAGGGGTATTGGATTGTCAATGTAAGAAGCAAAGACCGTCCTAAGCTGTTGTTTGACACAGTTTGTGCTCTCACTGACTTGGAATACGTTGTGTTCCATGCTCTGGTTTCTTCCGGGGGCACCATGGCTGATCAGGAATATTTTGTAAGGCACAAGGATGGCTACACTTTGAACGCAGAGAGTGAAAGGCAAAAGCTCACTCTATGTTTAGTTGCTGCAATAGAGAGAAGGATCTCAGAAGGATTGAGACTTGACCTCTGTGCCAAAAACCGGATGGGACTATTATCAGACATCACAAGGGTCTTCCGAGAGAGTGGTTTATCAATATCAAGAGTCGATGTTGGAACATACGGTGAGAGAGCGGTGGGATCAATCTATGTCACAGATGCTTCAGGTCACGATGTGAATCTGAACACAGTGGAATTGGTGACAAAGGAAATTGGAGGATCTGCCATTGCGGTTCACAAATCACAGAAGTGGGCTGCTCATGGTTCTTCATCAAGGACAAGCCAGAGAGTACCAAACACGAGAGTAGAAGATGAAGGAAAACCAAGACCGTCATTTGGAAGTTTGCTCTGGGCTCAACTGGAGCGCCTTTCCAGCAGCTTTGGACCCATTAGATCATAA
Functional Annotation

Protein Analysis

474

Amino Acids

52.62

Weight (kDa)

5.6

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACT PF01842 130 - 179 7.9e-07 ACT domain
ACT PF01842 353 - 407 4.1e-06 ACT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 364, 917
AccB7I CCANNNNNTGG 1 cut(s) 901
AccBSI CCGCTC 2 cut(s) 673, 1160
AccII CGCG 2 cut(s) 437, 650
AclWI GGATC 4 cut(s) 255, 1037, 1174, 1252
AcuI CTGAAG 1 cut(s) 1173
AdeI CACNNNGTG 2 cut(s) 308, 1201
AfaI GTAC 3 cut(s) 38, 695, 1317
AfiI CCNNNNNNNGG 9 cut(s) 70, 115, 244, 480, 610, 653, 901, 1068, 1361
AgsI TTSAA 2 cut(s) 599, 970
AjnI CCWGG 1 cut(s) 441
AleI CACNNNNGTG 2 cut(s) 110, 1273
AluBI AGCT 5 cut(s) 451, 583, 844, 994, 1404
AluI AGCT 5 cut(s) 451, 583, 844, 994, 1404
Alw21I GWGCWC 2 cut(s) 453, 868
Alw26I GTCTC 1 cut(s) 1039
AlwI GGATC 4 cut(s) 255, 1037, 1174, 1252
Ama87I CYCGRG 1 cut(s) 32
AoxI GGCC 1 cut(s) 539
ApaI GGGCCC 1 cut(s) 543
ApeKI GCWGC 6 cut(s) 456, 470, 580, 1013, 1280, 1401
AspA2I CCTAGG 1 cut(s) 349
AspLEI GCGC 1 cut(s) 1392
AspS9I GGNCC 9 cut(s) 157, 406, 439, 483, 539, 540, 550, 660, 1409
AsuC2I CCSGG 3 cut(s) 369, 414, 913
AsuHPI GGTGA 3 cut(s) 749, 1163, 1237
AsuNHI GCTAGC 1 cut(s) 562
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 7 cut(s) 157, 406, 439, 483, 550, 660, 1409
AvrII CCTAGG 1 cut(s) 349
BaeGI GKGCMC 2 cut(s) 543, 920
BanI GGYRCC 2 cut(s) 364, 917
BanII GRGCYC 3 cut(s) 453, 543, 1381
BauI CACGAG 3 cut(s) 110, 608, 1324
BbsI GAAGAC 1 cut(s) 1093
Bbv12I GWGCWC 2 cut(s) 453, 868
BbvI GCAGC 6 cut(s) 443, 457, 592, 1000, 1267, 1413
BccI CCATC 9 cut(s) 148, 206, 213, 518, 551, 612, 725, 950, 1066
BceAI ACGGC 3 cut(s) 52, 458, 575
BciT130I CCWGG 1 cut(s) 443
BclI TGATCA 1 cut(s) 928
BcnI CCSGG 3 cut(s) 369, 414, 913
BcoDI GTCTC 1 cut(s) 1039
BfaI CTAG 4 cut(s) 350, 389, 563, 584
BfoI RGCGCY 1 cut(s) 1393
BglII AGATCT 2 cut(s) 172, 429
BisI GCNGC 9 cut(s) 457, 471, 501, 581, 674, 677, 1014, 1281, 1402
BlnI CCTAGG 1 cut(s) 349
BlsI GCNGC 9 cut(s) 458, 472, 502, 582, 675, 678, 1015, 1282, 1403
Bme1390I CCNGG 4 cut(s) 369, 414, 443, 913
Bme18I GGWCC 7 cut(s) 157, 406, 439, 483, 550, 660, 1409
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 9 cut(s) 157, 406, 439, 483, 539, 540, 550, 660, 1409
BmiI GGNNCC 8 cut(s) 366, 485, 541, 552, 662, 680, 919, 1411
BmrFI CCNGG 4 cut(s) 369, 414, 443, 913
BmsI GCATC 2 cut(s) 288, 1174
BmtI GCTAGC 1 cut(s) 566
BpiI GAAGAC 1 cut(s) 1093
BpmI CTGGAG 2 cut(s) 170, 1406
Bpu10I CCTNAGC 1 cut(s) 840
BpuMI CCSGG 3 cut(s) 369, 414, 913
BsaBI GATNNNNATC 2 cut(s) 177, 1203
BsaJI CCNNGG 8 cut(s) 68, 349, 402, 435, 474, 648, 912, 921
BsaWI WCCGGW 1 cut(s) 1068
BsaXI ACNNNNNCTCC 2 cut(s) 788, 818
Bsc4I CCNNNNNNNGG 9 cut(s) 70, 115, 244, 480, 610, 653, 901, 1068, 1361
Bse1I ACTGG 2 cut(s) 153, 1389
Bse3DI GCAATG 1 cut(s) 1251
Bse8I GATNNNNATC 2 cut(s) 177, 1203
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 8 cut(s) 68, 349, 402, 435, 474, 648, 912, 921
BseGI GGATG 4 cut(s) 224, 235, 961, 1077
BseJI GATNNNNATC 2 cut(s) 177, 1203
BseLI CCNNNNNNNGG 9 cut(s) 70, 115, 244, 480, 610, 653, 901, 1068, 1361
BseMI GCAATG 1 cut(s) 1251
BseMII CTCAG 1 cut(s) 1047
BseNI ACTGG 2 cut(s) 153, 1389
BseRI GAGGAG 3 cut(s) 196, 626, 640
BseSI GKGCMC 2 cut(s) 543, 920
BseXI GCAGC 6 cut(s) 443, 457, 592, 1000, 1267, 1413
Bsh1236I CGCG 2 cut(s) 437, 650
Bsh1285I CGRYCG 2 cut(s) 413, 654
BshFI GGCC 1 cut(s) 541
BshNI GGYRCC 2 cut(s) 364, 917
BsiEI CGRYCG 2 cut(s) 413, 654
BsiHKAI GWGCWC 2 cut(s) 453, 868
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 4 cut(s) 368, 413, 912, 1069
BslFI GGGAC 2 cut(s) 713, 1089
BslI CCNNNNNNNGG 9 cut(s) 70, 115, 244, 480, 610, 653, 901, 1068, 1361
BsmAI GTCTC 1 cut(s) 1039
BsmFI GGGAC 2 cut(s) 713, 1089
BsmI GAATGC 1 cut(s) 47
BsnI GGCC 1 cut(s) 541
BsoBI CYCGRG 1 cut(s) 32
Bsp120I GGGCCC 1 cut(s) 539
Bsp1286I GDGCHC 5 cut(s) 453, 543, 868, 920, 1381
Bsp19I CCATGG 1 cut(s) 921
BspANI GGCC 1 cut(s) 541
BspCNI CTCAG 1 cut(s) 1046
BspFNI CGCG 2 cut(s) 437, 650
BspLI GGNNCC 8 cut(s) 366, 485, 541, 552, 662, 680, 919, 1411
BspOI GCTAGC 1 cut(s) 566
BspPI GGATC 4 cut(s) 255, 1037, 1174, 1252
BspT107I GGYRCC 2 cut(s) 364, 917
BsrBI CCGCTC 2 cut(s) 673, 1160
BsrDI GCAATG 1 cut(s) 1251
BsrI ACTGG 2 cut(s) 153, 1389
BssECI CCNNGG 8 cut(s) 68, 349, 402, 435, 474, 648, 912, 921
BssSI CACGAG 3 cut(s) 110, 608, 1324
BssT1I CCWWGG 3 cut(s) 349, 402, 921
Bst2BI CACGAG 3 cut(s) 110, 608, 1324
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 6 cut(s) 125, 836, 859, 1151, 1216, 1356
Bst6I CTCTTC 1 cut(s) 617
BstAPI GCANNNNNTGC 2 cut(s) 102, 308
BstC8I GCNNGC 2 cut(s) 300, 564
BstDEI CTNAG 2 cut(s) 840, 1033
BstDSI CCRYGG 5 cut(s) 68, 435, 474, 648, 921
BstENI CCTNNNNNAGG 1 cut(s) 113
BstF5I GGATG 4 cut(s) 224, 235, 961, 1077
BstFNI CGCG 2 cut(s) 437, 650
BstH2I RGCGCY 1 cut(s) 1393
BstHHI GCGC 1 cut(s) 1392
BstMAI GTCTC 1 cut(s) 1039
BstMCI CGRYCG 2 cut(s) 413, 654
BstMWI GCNNNNNNNGC 6 cut(s) 102, 308, 335, 371, 476, 1398
BstNI CCWGG 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 4 cut(s) 367, 412, 441, 911
BstSLI GKGCMC 2 cut(s) 543, 920
BstUI CGCG 2 cut(s) 437, 650
BstV1I GCAGC 6 cut(s) 443, 457, 592, 1000, 1267, 1413
BstV2I GAAGAC 1 cut(s) 1093
BstX2I RGATCY 4 cut(s) 172, 429, 1029, 1244
BstYI RGATCY 4 cut(s) 172, 429, 1029, 1244
BsuRI GGCC 1 cut(s) 541
BtgI CCRYGG 5 cut(s) 68, 435, 474, 648, 921
BtgZI GCGATG 1 cut(s) 744
BtsCI GGATG 4 cut(s) 224, 235, 961, 1077
BtsIMutI CAGTG 4 cut(s) 130, 267, 870, 1221
Cac8I GCNNGC 2 cut(s) 300, 564
CfoI GCGC 1 cut(s) 1392
Cfr13I GGNCC 9 cut(s) 157, 406, 439, 483, 539, 540, 550, 660, 1409
Cfr42I CCGCGG 2 cut(s) 438, 651
Csp6I GTAC 3 cut(s) 37, 694, 1316
CviAII CATG 6 cut(s) 93, 239, 773, 896, 922, 1286
CviQI GTAC 3 cut(s) 37, 694, 1316
DdeI CTNAG 2 cut(s) 840, 1033
DraIII CACNNNGTG 2 cut(s) 308, 1201
Eam1104I CTCTTC 1 cut(s) 617
EarI CTCTTC 1 cut(s) 617
Ecl136II GAGCTC 1 cut(s) 451
Eco130I CCWWGG 3 cut(s) 349, 402, 921
Eco24I GRGCYC 3 cut(s) 453, 543, 1381
Eco47I GGWCC 7 cut(s) 157, 406, 439, 483, 550, 660, 1409
Eco53kI GAGCTC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 1173
Eco88I CYCGRG 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 451
EcoNI CCTNNNNNAGG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 441
EcoT14I CCWWGG 3 cut(s) 349, 402, 921
EcoT38I GRGCYC 3 cut(s) 453, 543, 1381
ErhI CCWWGG 3 cut(s) 349, 402, 921
FaeI CATG 6 cut(s) 96, 242, 776, 899, 925, 1289
FaqI GGGAC 2 cut(s) 713, 1089
FatI CATG 6 cut(s) 92, 238, 772, 895, 921, 1285
FauI CCCGC 2 cut(s) 72, 655
FbaI TGATCA 1 cut(s) 928
Fnu4HI GCNGC 9 cut(s) 457, 471, 501, 581, 674, 677, 1014, 1281, 1402
FokI GGATG 4 cut(s) 231, 242, 968, 1084
FriOI GRGCYC 3 cut(s) 453, 543, 1381
Fsp4HI GCNGC 9 cut(s) 457, 471, 501, 581, 674, 677, 1014, 1281, 1402
FspBI CTAG 4 cut(s) 350, 389, 563, 584
GlaI GCGC 1 cut(s) 1391
GluI GCNGC 9 cut(s) 457, 471, 501, 581, 674, 677, 1014, 1281, 1402
GsuI CTGGAG 2 cut(s) 170, 1406
HaeII RGCGCY 1 cut(s) 1393
HaeIII GGCC 1 cut(s) 541
HapII CCGG 4 cut(s) 368, 413, 912, 1069
HhaI GCGC 1 cut(s) 1392
Hin1II CATG 6 cut(s) 96, 242, 776, 899, 925, 1289
Hin6I GCGC 1 cut(s) 1390
HinP1I GCGC 1 cut(s) 1390
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 3 cut(s) 57, 1131, 1204
HpaII CCGG 4 cut(s) 368, 413, 912, 1069
HphI GGTGA 3 cut(s) 749, 1163, 1237
Hpy166II GTNNAC 2 cut(s) 121, 1261
Hpy188I TCNGA 7 cut(s) 211, 427, 656, 1036, 1087, 1106, 1209
Hpy188III TCNNGA 6 cut(s) 112, 176, 608, 932, 1128, 1196
Hpy8I GTNNAC 2 cut(s) 121, 1261
HpyAV CCTTC 6 cut(s) 109, 748, 793, 1020, 1031, 1334
HpyCH4III ACNGT 6 cut(s) 125, 836, 859, 1151, 1216, 1356
HpyCH4IV ACGT 1 cut(s) 885
HpyCH4V TGCA 7 cut(s) 96, 105, 128, 329, 459, 792, 1016
HpyF10VI GCNNNNNNNGC 6 cut(s) 102, 308, 335, 371, 476, 1398
HpyF3I CTNAG 2 cut(s) 840, 1033
HpySE526I ACGT 1 cut(s) 885
Hsp92II CATG 6 cut(s) 96, 242, 776, 899, 925, 1289
HspAI GCGC 1 cut(s) 1390
Ksp22I TGATCA 1 cut(s) 928
KspI CCGCGG 2 cut(s) 438, 651
LmnI GCTCC 3 cut(s) 371, 684, 1387
Lsp1109I GCAGC 6 cut(s) 443, 457, 592, 1000, 1267, 1413
LweI GCATC 2 cut(s) 288, 1174
MaeI CTAG 4 cut(s) 350, 389, 563, 584
MaeII ACGT 1 cut(s) 885
MaeIII GTNAC 4 cut(s) 241, 1177, 1193, 1225
MbiI CCGCTC 2 cut(s) 673, 1160
MboII GAAGA 7 cut(s) 502, 533, 634, 900, 1093, 1284, 1346
MfeI CAATTG 1 cut(s) 686
MflI RGATCY 4 cut(s) 172, 429, 1029, 1244
MhlI GDGCHC 5 cut(s) 453, 543, 868, 920, 1381
MluCI AATT 5 cut(s) 9, 594, 686, 1220, 1236
MlyI GAGTC 1 cut(s) 1140
MmeI TCCRAC 2 cut(s) 634, 1120
MslI CAYNNNNRTG 3 cut(s) 110, 954, 1273
MspA1I CMGCKG 2 cut(s) 437, 650
MspI CCGG 4 cut(s) 368, 413, 912, 1069
MspR9I CCNGG 4 cut(s) 369, 414, 443, 913
MunI CAATTG 1 cut(s) 686
Mva1269I GAATGC 1 cut(s) 47
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 2 cut(s) 437, 650
MwoI GCNNNNNNNGC 6 cut(s) 102, 308, 335, 371, 476, 1398
NciI CCSGG 3 cut(s) 369, 414, 913
NcoI CCATGG 1 cut(s) 921
NheI GCTAGC 1 cut(s) 562
NlaIII CATG 6 cut(s) 96, 242, 776, 899, 925, 1289
NlaIV GGNNCC 8 cut(s) 366, 485, 541, 552, 662, 680, 919, 1411
NmeAIII GCCGAG 2 cut(s) 234, 432
NmuCI GTSAC 4 cut(s) 241, 1177, 1193, 1225
NspI RCATGY 1 cut(s) 96
OliI CACNNNNGTG 2 cut(s) 110, 1273
PcsI WCGNNNNNNNCGW 2 cut(s) 615, 708
PctI GAATGC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 57, 1204
PflMI CCANNNNNTGG 1 cut(s) 901
PkrI GCNGC 9 cut(s) 458, 472, 502, 582, 675, 678, 1015, 1282, 1403
PleI GAGTC 1 cut(s) 1139
PpsI GAGTC 1 cut(s) 1139
Psp124BI GAGCTC 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 8 cut(s) 366, 485, 541, 552, 662, 680, 919, 1411
PspOMI GGGCCC 1 cut(s) 539
PspPI GGNCC 9 cut(s) 157, 406, 439, 483, 539, 540, 550, 660, 1409
PsuI RGATCY 4 cut(s) 172, 429, 1029, 1244
RsaI GTAC 3 cut(s) 38, 695, 1317
RsaNI GTAC 3 cut(s) 37, 694, 1316
RseI CAYNNNNRTG 3 cut(s) 110, 954, 1273
SacI GAGCTC 1 cut(s) 453
SacII CCGCGG 2 cut(s) 438, 651
SatI GCNGC 9 cut(s) 457, 471, 501, 581, 674, 677, 1014, 1281, 1402
Sau96I GGNCC 9 cut(s) 157, 406, 439, 483, 539, 540, 550, 660, 1409
SchI GAGTC 1 cut(s) 1140
ScrFI CCNGG 4 cut(s) 369, 414, 443, 913
SduI GDGCHC 5 cut(s) 453, 543, 868, 920, 1381
SetI ASST 9 cut(s) 120, 453, 585, 846, 888, 996, 1056, 1195, 1406
SfaNI GCATC 2 cut(s) 288, 1174
Sfr303I CCGCGG 2 cut(s) 438, 651
SgrBI CCGCGG 2 cut(s) 438, 651
SinI GGWCC 7 cut(s) 157, 406, 439, 483, 550, 660, 1409
SmiMI CAYNNNNRTG 3 cut(s) 110, 954, 1273
Sse9I AATT 5 cut(s) 9, 594, 686, 1220, 1236
SspI AATATT 1 cut(s) 938
SspMI CTAG 4 cut(s) 350, 389, 563, 584
SstI GAGCTC 1 cut(s) 453
StyD4I CCNGG 4 cut(s) 367, 412, 441, 911
StyI CCWWGG 3 cut(s) 349, 402, 921
TaaI ACNGT 6 cut(s) 125, 836, 859, 1151, 1216, 1356
TaiI ACGT 1 cut(s) 888
TaqI TCGA 7 cut(s) 27, 51, 81, 519, 766, 779, 1134
TaqII GACCGA 1 cut(s) 423
TasI AATT 5 cut(s) 9, 594, 686, 1220, 1236
TauI GCSGC 3 cut(s) 503, 676, 679
TfiI GAWTC 2 cut(s) 57, 1204
TscAI CASTG 4 cut(s) 130, 274, 877, 1221
TseFI GTSAC 4 cut(s) 241, 1177, 1193, 1225
TseI GCWGC 6 cut(s) 456, 470, 580, 1013, 1280, 1401
Tsp45I GTSAC 4 cut(s) 241, 1177, 1193, 1225
TspDTI ATGAA 2 cut(s) 1284, 1353
TspGWI ACGGA 4 cut(s) 260, 549, 563, 673
TspRI CASTG 4 cut(s) 130, 274, 877, 1221
Van91I CCANNNNNTGG 1 cut(s) 901
VpaK11BI GGWCC 7 cut(s) 157, 406, 439, 483, 550, 660, 1409
XagI CCTNNNNNAGG 1 cut(s) 113
XceI RCATGY 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 1069
XmaJI CCTAGG 1 cut(s) 349
XspI CTAG 4 cut(s) 350, 389, 563, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.